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pg DQ1BS (#RDB01230)

DQw6beta short, Short cytoplasmic from DQB, DQB1*0601, HLA-DQB1 (genomic DNA+cDNA)

Alternative name DQw6 beta short
Clone info. Human HLA-DQB1 genomic DNA and cDNA from EBV-B cells TOK library, Short cytoplasmic from DQB, DQB1*0601, HLA-DQB1
Vector backbone pTZ19R (Plasmid)
Size of vector backbone 2.9 kb
Selectable markers Amp^r
Gene/insert name Human HLA-DQB1 Genomic DNA + cDNA
Depositor|Developer Kimura, Akinori | Senju, Satoru |
 

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RDB01230 pg DQ1BS DNA solution

Please review the QC test results indicated by check icon below as well as clone information before placing your order.

How to cite this biological resource

Materials & Methods section:

The pg DQ1BS was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan (cat. RDB01230).

Reference section:

Senju, S., Kimura, A., Yasunami, M., Kamikawaji, N., Yoshizumi, H., Nishimura, Y., Sasazuki, T., Allele-specific expression of the cytoplasmic exon of HLA-DQB1 gene. Immunogenetics, 36, 319-325 (1992). PMID 1644449.

Further references such as user reports and related articles (go to bottom)


QC test results

RIKEN BRC has sequenced portions of this material for quality test.
Please review the QC test results indicated by check icon as well as clone information before placing your order.

Test sheet RDB01230_B1Bfp1-1.pdf check

Nucleotide sequence of a portion of this resource (if available).

Primer: pUC-CAPbs_up_F2 (Pr0739)
Region: T7 pro,insert 5'(b region,c region 5')
Sequence file: RDB01230_B1Bfa.seq check
>01230_01230_B1Bf_1_pUC-CAPbs_up_F2_H02_23_ABI24.ab1
    1 NNNNNNNNNN NNNNNNNNGC TTNNNNCTTT ATGCTTCCGG CTCGTATGTT GTGTGGAATT
   61 GTGAGCGGAT AACAATTTCA CACAGGAAAC AGCTATGACC ATGATTACGC CAAGCTCTAA
  121 TACGACTCAC TATAGGGAAA GCTTCAGGCT TGGCCTGGTG GAGTTAGGGC TGCCCCACAA
  181 CTGCGCTCAG GGCATCCAGC AATTACAGTT GCGAAATAAG ATATTTTGAC TTTTTGGCTT
  241 CAAATCATTA TTCATCGTAA TTCTGTTTTC TTAAATGGCT ATCACTCATG GCGGAGATCT
  301 TTGAGGCGAG AGACTGTTTA ATTATTGCAT GCTTGGTACC ATTTCTTCTG AAGCTATTCC
  361 AAGTAATTGA AAAGGAGGAC TCCTCTCTAA CTCATTTTAT GAGGCCAGCG TCATCCTGAT
  421 ACCAAAGCCT GACAGAGATA CAACAAAAAA GGAAAACTTC AGGCCAATAT CACTGATGGA
  481 CACTGATTAA AAAATCCTCA ATAAAATACT GGCAAGCCGA ATCCACCAGC ACATCAAAAA
  541 GTTCATCCAC CACGATCAAG TTGGCATCAT CCCCAGGANG CCNGGCTGTT TCNACATATG
  601 CNAATCNATA NACATAATTC ATTACATAAA CNGAATTNAA GANAAAAACN ACATGATTAN
  661 CTNNANAGAC NCNGAAAANN NNNNCNNTAA AANTNANNNT CCNTTNNNGN NNAANNNCNC
721 NNNANNNNNN NNNN
//
Primer: pGL3basic_4406F (Pr0078)
Region: f1 ori,M13 fwd,insert 3'(e region 3')
Sequence file: RDB01230_B1Bfb.seq check
>01230_01230_B1Bf_1_pGL3basic_4406F_A01_01_ABI08.ab1
    1 NNNNNNNNNN NNNNNNNNNN NNNGNNNNNN NNNAGCTGAT TTAACAAAAA TTTAACGCGA
   61 ATTTTAACAA AATNNNNNNC GCTTACAATT TCCATTCGCC ATTCAGGCTG CGCAACTGTT
  121 GGGAAGGGCG ATCGGTGCGG GCCTCTTCGC TATTACGCCA GCTGGCGAAA GGGGGATGTG
  181 CTGCAAGGCG ATTAAGTTGG GTAACGCCAG GGTTTTCCCA GTCACGACGT TGTAAAACGA
  241 CGGCCAGTGA ATTCGAGCTC TGCCATTTGT CCTGTGGGCT CCACAAGAAA CAAACTGCCC
  301 CTTACACCCC TCCACTGTGA GGAGGCTGTG GAGGCTGAGG TGCTCCACAT GGCTGGTGTA
  361 GACATCTGCA CACTGGAAGT CATTTCCAGG ACCACAAGGA TCTGGAAAAT CCAGTCCTCC
  421 TTCCTAATAA GAGCGATGGA CACAATGCTG GCTGTCAGCA TCCCGTGCAC AGGACAATGT
  481 GTTTGAGAGG TGTGCATGTT ACCCAGGCTT GGCCAATCAG AATCTTTCCT AAAGTTGTTA
  541 AAACTCTGGT AGACATTCTA GAAACATATA TTAACAGAGA CAGACAAACA GACACACACA
  601 CACACACACA CACACACACA CACACAGCAA GAGAGAGAGA TGAGATAAGA NATGAAGTGA
  661 TAANGNAGAN AAATGCAGAA AAATAGATGC AAAAAGAAAC ACGGNNNTAG AAAAAANNGN
721 ANANAANCNN NNNNNNANNN GNNNNNNAN
//
Primer: 0601-exon2_F2 (Pr0978)
Region: insert mid(c region-exon 2 3')
Sequence file: RDB01230_B1Bfc.seq check
>01230_01230_1_B1Bf_0601-exon2_F2_D03_12_ABI24.ab1
    1 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN CNTCTATAAC CGNNNNNNNG NNGTGCGCTT
   61 CGACAGCGAC GTGGGGGTGT ATCGGGCGGT GACGCCGCAG GGGCGGCCTG ACGCCGAGTA
  121 CTGGAACAGC CAGAAGGACA TCCTGGAGAG GACCCGAGCG GAGTTGGACA CGGTGTGCAG
  181 ACACAACTAC GAGGTGGCGT TCCGCGGGAT CTTGCAGAGG AGAGGTGAGC GTGGTTGACC
  241 CTCCGTGAGG CGCACCCTTG GCCGGGACCC CGAGTCTCTG TGCCGGGAGG GGCGATGGGG
  301 GCGCGGCCTC TGAAATCTGA GCCTCGTTCA TTCCACGCCA GGAGACAGGA GGCGGCGGAG
  361 GGGGTGGTGG GGGCAGGTGC ACCGGAGGAG CGGGGACCTA GGGCAGAGCA GGGGGACAAG
  421 CAGAGTTGAC TAGGCTGCCT AGTGTCCCCC CAGCCTCCCC GTCCGTCGGC TTCGTCCTCT
  481 GCTCTGCAGG TTTCTCGCCT TCTGCCTTGT GCGTTTGCCT CCTCGTGCCT TACCTTTACT
  541 AAGCAGTTCT CTCTGCCCCC AGTGCCCACC CTCTTCCCCT GCCCGCCTGC CCCGCTAGTA
  601 CTGCCCCACC CAGCAAGGCC CACGTACGCA GCTCGCGCCT CAGGAAGCTT CAGGCTTGGC
  661 CTGNNGGAGT TAGGGCTGCC CCACAACTGC GCTCAGGGCA TCCNGCAATT ACAGTTGCGA
  721 AATAAGANAT TTTGACTTTT TGGCTTCNAA TCNTTATTCA TCGNAATTCT GNTTTCTTAA
  781 ATGNCTATCA CTCATGGCGG ANATCTTTGA NGNGANANAC NGNTTNATTA TTGCNNGCTN
  841 GGNNCCTGAC ACNTTGACNG GTATGNGNNA TGANCTCNNN GATCTNNNNN TAANTTCNTG
  901 AANNANTGNN CNCNGCTGNN NNNNCNNTNN NNGNTCNANA AAAAANNNNA NGCTNNCAAN
  961 NNGNANNNNA NNNNNNACNT TNCNANCNTT TNGNNTNNNN NNTNCNAANN NANNTNNTNN
1021 NNNNNNNN
//
Primer: 0601-exon2_R2 (Pr0979)
Region: insert mid(c region-exon 2 5')
Sequence file: RDB01230_B1Bfd.seq check
>01230_01230_B1Bf_1_0601-exon2_R2_L96_D01_04_ABI08.ab1
    1 NNNNNNNNNN NNNNNNNNNN NNCCCNCNNC GCTGTCGNAN CGCACGTCCT CCTCTCGGTT
   61 ATAGATGTAT CTGGTCACAT AACGCACGCG CTCCGTCCCA TTGGTGAAGT AGCACATGGC
  121 CTTAAACTGG AGCACGAAAT CCTCTGCGGG GAATCACCGG CCGGTCAGTC AGGCCCCAGC
  181 CTGGCCCTAG CCCGGCCGCC CCCGCAGCCG CCGCCCTGAC CCGGCCCGGA GCTGTGGAAC
  241 CGCCCGCGCG ACCTCCAGTT CCCGCCTGCC CGTGTCTGGC GCTCCAGAAC TGGGATCCTC
  301 CCGGCGGCTC TGCTCAGCCC TGCCCGCCCT CTCTGGGGGC TTCGGGAATC TGCCTTCCTA
  361 CAGCCAGGAA AGGGAGGAAA GCCCTGTCCC TGCCTGAGCC AGTGAACTCA GCGAAGAGGC
  421 AGTCGGGCTG ATTTTACATG GACCTCTACA CTTAGAGGGA TCAGGGCGTT CTCGCATGAA
  481 ATCCCATTTT TCATGAAGCT CCTGGATACC TCAGAGATAT AGTTAATCCA CAAAAACTTG
  541 AGAGTTCAAG GGAATGACGA GACAGGTCCA GGAANTAAGC CTGTCCTCGT TCTGATACGC
  601 GTATTCTCTT GGTCCCTGGG TAAANNACCT TCCTTCCNNT GNCTGGANTT ACCNTANCNN
  661 GTNCNGTTGA NGNTNNNTCC CNTCTANGTT AGAAANGANN NACNNNTCTN NNNNCTANNN
721 NNNAANNNNT TNNNTNNNNN GNN
//
Primer: 0601b-B_F (Pr0965)
Region: insert mid(b region 5',c region 3')
Sequence file: RDB01230_B1Bfe.seq check
>01230_01230_B1Bf_1_0601b-B_F_C01_03_ABI08.ab1
    1 NNNNNNNNNN NNNNNNNGNN NNNNNTTGAG CTCNTACCNC ATACCAGTCA ATGTGTCAGG
   61 TACCAAGCAT GCAATAATTA AACAGTCTCT CGCCTCAAAG ATCTCCGCCA TGAGTGATAG
  121 CCATTTAAGA AAACAGAATT ACGATGAATA ATGATTTGAA GCCAAAAAGT CAAAATATCT
  181 TATTTCGCAA CTGTAATTGC TGGATGCCCT GAGCGCAGTT GTGGGGCAGC CCTAACTCCA
  241 CCAGGCCAAG CCTGAAGCTT CCTGAGGCGC GAGCTGCGTA CGTGGGCCTT GCTGGGTGGG
  301 GCAGTACTAG CGGGGCAGGC GGGCAGGGGA AGAGGGTGGG CACTGGGGGC AGAGAGAACT
  361 GCTTAGTAAA GGTAAGGCAC GAGGAGGCAA ACGCACAAGG CAGAAGGCGA GAAACCTGCA
  421 GAGCAGAGGA CGAAGCCGAC GGACGGGGAG GCTGGGGGGA CACTAGGCAG CCTAGTCAAC
  481 TCTGCTTGTC CCCCTGCTCT GCCCTAGGTC CCCGCTCCTC CGGTGCACCT GCCCCCACCA
  541 CCCCCTCCGC CGCCTCCTGT CTCCTGGCGT GGAATGAACG AGGCTCAGAT TTCAGAGGCC
  601 GCGCCCCCAT CGCCCCTCCC GGCACAGAGA CTCGGGGTCC CGGCCNAGGG TGCGCCTCAC
  661 GGANGGTCAA CCACGCTCAC CTCTCCTCTG NAAGANCCCG CGNAANGCCN NCTCNNANTT
721 GNGTCTGNNC ACCNNNNNCA NNTNNNNTCN GNNNNNNN
//
Primer: B10401-T_F (Pr0968)
Region: insert mid(b region 3',e region 5')
Sequence file: RDB01230_B1Bff.seq check
>01230_01230_B1Bf_1_B10401-T_F_F01_06_ABI08.ab1
    1 NNNNNNNNNN NNNNNNNNNN CTGANTGANA GAGCTTATTG CAGGANACCC TTACCATTTA
   61 TCATTGTCTC ACTGGCTCCT TTCCAAAAGC TTCCTCCATT AAGAGGGTCA GAGCCTTGGC
  121 CTCCTTGCCT TCTAGTGACA ATTTTCTTTG TTTTAGGGGA TTTTAAATTA GGGTACTTAA
  181 GGCCTTGAAG AACATGAGTG GTAAGAGAAT ATAACTCTAA TTAAGTCACA TGTGTCATTT
  241 TCCTTTGGGG TGAAAGAGTG GCTGTTTGTG TAATGAGACC TTTCTCTGCA TAACTTCCTT
  301 TTGTAAGACC TCAAGGGCCT CCACCAGCAG GTGATATTTC AGCCATGAGC CAGTGTGGGG
  361 GGGCACAGGT GTAAGAGGGA AGAGCATGAG CTGAATGCAC CTGACCACAA TGGTCTCTGT
  421 TCATGGTATA TTTGCTGCTA TGAGGATCAA GACTTAGGGT CGAAGTTTGC CAGTTTCTAG
  481 GAATCTCCAG AGGTTGTTCC CCAGAACCAA GCCTTAACTT TGGTGGTATC TTCTTGTGAA
  541 ATGTGAAGCC AGAACCACAG CTTAAATGTT AGACAAGAGG ANGANGCCCA CTTTGTGCCA
  601 CATGTTGGTG GCTACTGCCT GTANGCATTT TCCAGTGACT GAAAGANGCT GCTAGTGGTA
  661 NGGANGANGN ATCATCCAAT TTTCNNAAAA NANTGANNCC TTNNNANTCC CNNNNANNAN
721 TANNNNCTNN NNNNNCNNNN NNNNNN
//

Please visit Sequencing and PCR primers for primer information.


References

Original, user report and related articles

original Senju, S., Allele-specific expression of the cytoplasmic exon of HLA-DQB1 gene. Immunogenetics, 36, 319-325 (1992). PMID 1644449.