RIKEN DNA Bank Mouse Resource

RIKEN DNA Bank Mouse Resource - Rab40c

Gene ID	NCBI Gene 224624 \| KEGG mmu:224624
Gene Symbol	Rab40c
Protein Name	Rab40C, member RAS oncogene family
Synonyms	RAR3
Featured content	Rab Family - mouse

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Ortholog resource in our bank

Rab40c

External dsatabase

mouse Rab40c

Individualy Deposited Resource

Catalog number	Name of Resource	Description	CDS comparison
Catalog number	Name of Resource	Description	Refered (NCBI mRNA)	CDS status⁽¹⁾
RDB20771	pMRX-puro-mStr-Rab40C-N126I	Expression vector of mouse mStrawberry-Rab40C constitutive negative mutant (N126I).
RDB18917	pGBD-C1-Rab40C-deltaCys-N126I	Expression vector of mouse Rab40C constitutive negative mutant (N126I) lacking a C-terminal geranylgeranylation site (delta Cys) for yeast two-hybrid assay.
RDB18916	pGBD-C1-Rab40C-deltaCys-Q73L	Expression vector of mouse Rab40C constitutive active mutant (Q73L) lacking a C-terminal geranylgeranylation site (delta Cys) for yeast two-hybrid assay.
RDB17440	pGBD-C1-Rab40C-delta Cys-G28N	Expression vector of constitutive negative mutants of mouse Rab40C (G28N) for yeast two-hybrid assay.
RDB16902	pEGFP-C1-Rab40C-Q73L	Expression vector of mouse Rab40C constitutive active mutant, Q73L, fused with EGFP at N-terminus.
RDB16901	pEGFP-C1-Rab40C-G28N	Expression vector of mouse Rab40C constitutive negative mutant, G28N, fused with EGFP at N-terminus.
RDB14338	pEGFP-C1-Rab40	Expression vector of EGFP-tagged mouse Rab40C full-length (1-281 aa).

(1) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.

webcatalog20240727.tab

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number	Clone name	Vector	Sequence		Status
Catalog number	Clone name	Vector	5' terminal EST, submitted in DDBJ⁽¹⁾	3' terminal EST, submitted in DDBJ⁽¹⁾	Status
MCH082106	H4005E10	pSPORT1	BQ550806	BQ550805
MCH081633	H4004B09	pSPORT1	BQ550575

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_2024May11.csv

Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search	[map around Gene ID 224624] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.

2025.03.21

Mus_musculus_gene_info230514.csv - RDB_mmu_GIxxxxxxxxx_html_240727.pl