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RIKEN DNA Bank Mouse Resource - Nptn

Gene ID NCBI Gene 20320 |  KEGG mmu:20320
Gene Symbol Nptn
Protein Name neuroplastin
Synonyms SDR-1|Sdfr1
Ortholog resource in our bank

  Nptn

External dsatabase

  KEGG gene

  KEGG Ortholog

  NCBI Gene

Individualy Deposited Resource

Catalog number Name of Resource Description
RDB06783 mouse SDR-1 alpha cDNA Plasmid clone of mouse SDR1 alpha
RDB06784 mouse SDR-1 beta cDNA Plasmid clone of mouse SDR-1 beta cDNA
RDB18963 pCX4-mNPTN-c-HA (281) Retroviral expression vector of mouse Nptn.
RDB18964 pCX4-mNPTN-c-HA (397) Retroviral expression vector of mouse Nptn.

webcatalog20220516.tab

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH055347 H3138G03 pSPORT1 BG087365 BG074742  
MCH020408 H3051A08 pSPORT1 BG080211 BG067139  
MCH080452 H4001C04 pSPORT1 BQ550078 BQ550077  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_2023May31.csv

Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 20320] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.

2023.10.05

Mus_musculus_gene_info230514.csv - RDB_mmu_GIxxxxxxxxx_html_220215.pl