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RIKEN DNA Bank Mouse Resource - Vps39

Gene ID NCBI Gene 269338 |  KEGG mmu:269338
Gene Symbol Vps39
Protein Name VPS39 HOPS complex subunit
Synonyms A230065P22Rik|AW743070|Vam6|Vam6P|mVam6
Ortholog resources KEGG ortholog (KEGG orthology K20183) in the DNA Bank
Links

  KEGG gene

  KEGG Ortholog

  NCBI Gene


Individualy Deposited Resource

Catalog number Name of Resource Description
RDB14679 pEF-T7-mouse Vps39 Expression vector of mouse VPS39, HOPS complex subunit.

webcatalog20210331.tab


NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH013332 H3033F12 pSPORT1 BG078927 BG065653  
MCH057203 H3143A03 pSPORT1 BG075074  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_170401.csv


Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 269338] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.


2021.04.02

Mus_musculus_gene_info200108.csv - RDB_mmu_GIxxxxxxxxx_html_210401.pl