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RIKEN DNA Bank Mouse Resource - Syt11

Gene ID NCBI Gene 229521 |  KEGG mmu:229521
Gene Symbol Syt11
Protein Name synaptotagmin XI
Synonyms 1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik

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Ortholog resource in our bank

  Syt11


External dsatabase

mouse Syt11

Individualy Deposited Resource

Catalog number Name of Resource Description CDS comparison
Refered (NCBI mRNA) CDS status(1)
RDB14691 pEF-T7-Syt XI (Syt11) Expression vector of mouse synaptotagmin XI (Syt XI) [Syt 11].    

(1) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.

webcatalog20240727.tab


NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH042504 H3106E08 pSPORT1 BG084832 BG072082  
MCH044521 H3111F01 pSPORT1 BG085307 BG072511  
MCH008125 H3020F05 pSPORT1 BG077929 BG064514  
MCH015353 H3038G09 pSPORT1 BG079355 BG066090  
MCH017651 H3044C03 pSPORT1 BG079710 BG066623  
MCH018883 H3047D11 pSPORT1 BG079997 BG066832  
MCH038410 H3096A10 pSPORT1 BG084092 BG071217  
MCH038810 H3097A10 pSPORT1 BG084156 BG071287  
MCH038956 H3097G12 pSPORT1 BG084223 BG071355  
MCH039252 H3098C04 pSPORT1 BG084256 BG071376  
MCH041327 H3103F07 pSPORT1 BG084672 BG071830  
MCH044050 H3110C02 pSPORT1 BG085237 BG072412  
MCH063676 H3159D04 pSPORT1 BG088923 BG076398  
MCH019608 H3049A08 pSPORT1 BG066964  
MCH046829 H3117B05 pSPORT1  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_2024May11.csv


Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 229521] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.


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2024.09.24

Mus_musculus_gene_info230514.csv - RDB_mmu_GIxxxxxxxxx_html_240727.pl