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RIKEN DNA Bank Mouse Resource - Rbm39

Gene ID NCBI Gene 170791 |  KEGG mmu:170791
Gene Symbol Rbm39
Protein Name RNA binding motif protein 39
Synonyms 1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper
Ortholog resources KEGG ortholog (KEGG orthology K13091) in the DNA Bank
Links

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  NCBI Gene

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH011601 H3029A01 pSPORT1 BG078540 BG065252  
MCH057229 H3143B05 pSPORT1 BG087733 BG075085  
MCH086456 H4016C08 pSPORT1 BQ552517 BQ552516  
MCH096003 H4040A03 pSPORT1 BQ556413 BQ556412  
MCH095729 H4039F09 pSPORT1 BQ556363 BQ556362  
MCH109301 H4073E05 pSPORT1 BQ561988 BQ561987  
MCH018947 H3047G03 pSPORT1 CK334536  
MCH090524 H4026F04 pSPORT1 BQ554189  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_170401.csv

Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 170791] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.

2020.07.11

Mus_musculus_gene_info200108.csv - RDB_mmu_GIxxxxxxxxx_html_191217.pl