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RIKEN DNA Bank Mouse Resource - Usp48

Gene ID NCBI Gene 170707 |  KEGG mmu:170707
Gene Symbol Usp48
Protein Name ubiquitin specific peptidase 48
Synonyms 2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31
Ortholog resources KEGG ortholog (KEGG orthology K11858) in the DNA Bank

  KEGG gene

  KEGG Ortholog

  NCBI Gene

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH027283 H3068D11 pSPORT1 BG081730 BG068704  
MCH108028 H4070B04 pSPORT1 BQ561407 BQ561406  
MCH030098 H3075E02 pSPORT1 BG082371 BG069431  
MCH080460 H4001C12 pSPORT1 BQ550091  
MCH057205 H3143A05 pSPORT1 BG075075  
MCH003253 H3008C05 pSPORT1  
MCH002971 H3007H03 pSPORT1 CK334186 BG063490  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.


Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 170707] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.


Mus_musculus_gene_info200108.csv -