RIKEN DNA Bank Mouse Resource

RIKEN DNA Bank Mouse Resource - Otub1

Gene ID	NCBI Gene 107260 \| KEGG mmu:107260
Gene Symbol	Otub1
Protein Name	OTU domain, ubiquitin aldehyde binding 1
Synonyms	-

Ortholog resource in our bank

Otub1

External dsatabase

  KEGG gene

  KEGG Ortholog

  NCBI Gene

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number	Clone name	Vector	Sequence		Status
Catalog number	Clone name	Vector	5' terminal EST, submitted in DDBJ⁽¹⁾	3' terminal EST, submitted in DDBJ⁽¹⁾	Status
MCH030008	H3075A08	pSPORT1	BG082331	BG069314
MCH108477	H4071D05	pSPORT1	BQ561617

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_2023May31.csv

Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search	[map around Gene ID 107260] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.

2023.09.23

Mus_musculus_gene_info230514.csv - RDB_mmu_GIxxxxxxxxx_html_220215.pl