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RIKEN DNA Bank Mouse Resource - Prg4

Gene ID (NCBI) 96875
Gene Symbol Prg4
Protein Name proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
Synonyms CACP|DOL54|JCAP|MSF|SZP|lubricin
Databases KEGG link 01 |  NCBI Gene link 01

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH018150 H3045G06 pSPORT1 BG079843 BG066593  
MCH023603 H3059A03 pSPORT1 BG080916 BG067858  
MCH056451 H3141C03 pSPORT1 BG087562 BG074941  
MCH080973 H4002H05 pSPORT1 BQ550358 BQ550357  
MCH100877 H4052D05 pSPORT1 BQ558470  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.


Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 96875] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.


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