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RIKEN DNA Bank Mouse Resource - Vps9d1

Gene ID NCBI Gene 72325 |  KEGG mmu:72325
Gene Symbol Vps9d1
Protein Name VPS9 domain containing 1
Synonyms 1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1

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Ortholog resource in our bank

External dsatabase

mouse Vps9d1

Individualy Deposited Resource

Catalog number Name of Resource Description CDS comparison
Refered (NCBI mRNA) CDS status(1)
RDB19826 pmStr-C1-Vps9d1-Y628A (YA) Expression vector of mouse Vps9d1-Y628A (GEF-activitiy-deficient mutant) tagged with mnonomeric Strawberry at N-terminus.    
RDB19825 pmStr-C1-Vps9d1 Expression vector of mouse Vps9d1 tagged with monomeric Strawberry at N-terminus.    

(1) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.

webcatalog20240727.tab

Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 72325] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.

2024.10.04

Mus_musculus_gene_info230514.csv - RDB_mmu_GIxxxxxxxxx_html_240727.pl