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RIKEN DNA Bank Mouse Resource - Sh3rf1

Gene ID NCBI Gene 59009 |  KEGG mmu:59009
Gene Symbol Sh3rf1
Protein Name SH3 domain containing ring finger 1
Synonyms 2200003J05Rik|Posh|R75531|Sh3md2
Ortholog resources KEGG ortholog (KEGG orthology K12171) in the DNA Bank

  KEGG gene

  KEGG Ortholog

  NCBI Gene

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH104529 H4061F09 pSPORT1 BQ560000 BQ559999  
MCH015229 H3038B05 pSPORT1 BG079298 BG066032  
MCH044975 H3112H07 pSPORT1 BG085406 BG072612  
MCH056522 H3141F02 pSPORT1 BG087668 BG074970  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.


Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 59009] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.


Mus_musculus_gene_info200108.csv -