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RIKEN DNA Bank Mouse Resource - Gpc6

Gene ID NCBI Gene 23888 |  KEGG mmu:23888
Gene Symbol Gpc6
Protein Name glypican 6
Synonyms -
Ortholog resources KEGG ortholog (KEGG orthology K08112) in the DNA Bank

  KEGG gene

  KEGG Ortholog

  NCBI Gene

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH098402 H4046A02 pSPORT1 BQ557416 BQ557415  
MCH025651 H3064C03 pSPORT1 CK334611 CK334610  
MCH028825 H3072B01 pSPORT1 BG082066 BG069042  
MCH024927 H3062F07 pSPORT1 BG068183  
MCH086006 H4015A06 pSPORT1 BQ552318  
MCH084812 H4012A12 pSPORT1 BQ551878 BQ551877  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.


Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 23888] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.


Mus_musculus_gene_info200108.csv -