RIKEN DNA Bank Mouse Resource

RIKEN DNA Bank Mouse Resource - Zyx

Gene ID	NCBI Gene 22793 \| KEGG mmu:22793
Gene Symbol	Zyx
Protein Name	zyxin
Synonyms	9530098H06Rik

Link

Ortholog resource in our bank

Zyx

External dsatabase

mouse Zyx

Individualy Deposited Resource

Catalog number	Name of Resource	Description	CDS comparison
Catalog number	Name of Resource	Description	Refered (NCBI mRNA)	CDS status⁽¹⁾
RDB17812	pN1-zyxin-QUE37C	ATP measurement, focal adhesion
RDB13343	pONL-N1_zyxin	Orange Nano-lantern for labeling of focal adhesions by the mouse zyxin.
RDB13342	pCNL-N1_zyxin	Cyan Nano-lantern for labeling of focal adhesions by the mouse zyxin.
RDB13341	pYNL-N1_zyxin	Yellow Nano-lantern for labeling of focal adhesions by the mouse zyxin.

(1) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.

webcatalog20240727.tab

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number	Clone name	Vector	Sequence		Status
Catalog number	Clone name	Vector	5' terminal EST, submitted in DDBJ⁽¹⁾	3' terminal EST, submitted in DDBJ⁽¹⁾	Status
MCH057699	H3144E03	pSPORT1	BG087751	BG075201

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_2024May11.csv

Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search	[map around Gene ID 22793] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.

2024.10.04

Mus_musculus_gene_info230514.csv - RDB_mmu_GIxxxxxxxxx_html_240727.pl