RIKEN DNA Bank Mouse Resource

RIKEN DNA Bank Mouse Resource - Suv39h1

Gene ID	NCBI Gene 20937 \| KEGG mmu:20937
Gene Symbol	Suv39h1
Protein Name	suppressor of variegation 3-9 1
Synonyms	DXHXS7466e\|H3-K9-HMTase 1\|KMT1A\|mIS6

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Ortholog resource in our bank

Suv39h1

External dsatabase

mouse Suv39h1

Individualy Deposited Resource

Catalog number	Name of Resource	Description	CDS comparison
Catalog number	Name of Resource	Description	Refered (NCBI mRNA)	CDS status⁽¹⁾
RDB15901	pMCs-GFP-Suv39h1-mut3	Retroviral expression vector of mouse SUV39H1, nucleic acid-binding defective mutant (R99A, R100A).
RDB15900	pMCs-GFP-Suv39h1-mut1	Retroviral expression vector of mouse SUV39H1, nucleic acid-binding defective mutant (R84A, K87A).
RDB15899	pMCs-GFP-Suv39h1-Y67A-4A	Retroviral expression vector of mouse SUV39H1, nucleic acid-binding defective mutant and methylated H3K9 binding mutant (R84A, K87A, K91A, R95A and Y67A).
RDB15898	pMCs-GFP-Suv39h1-Y67A	Retroviral expression vector of mouse SUV39H1, methylated H3K9 binding mutant (Y67A).
RDB15897	pMCs-GFP-Suv39h1-4A	Retroviral expression vector of mouse SUV39H1, nucleic acid-binding defective mutant (R84A, K87A, K91A, R95A).
RDB15896	pMCs-GFP-Suv39h1	Retroviral expression vector of mouse SUV39H1, wild type.
RDB15895	pCAG-FLAG-IRESpuro (NRI)-mmSuv39H1-mut3	Expression vector of mouse SUV39H1, nucleic acid-binding defective mutant (R99A, R100A).
RDB15894	pCAG-FLAG-IRESpuro (NRI)-mmSuv39H1-mut1	Expression vector of mouse SUV39H1, nucleic acid-binding defective mutant (R84A, K87A).
RDB15893	pCAG-FLAG-IRESpuro (NRI)-mmSuv39H1-Y67A-4A	Expression vector of mouse SUV39H1, nucleic acid-binding defective mutant and methylated H3K9 binding mutant (R84A, K87A, K91A, R95A and Y67A).
RDB15892	pCAG-FLAG-IRESpuro (NRI)-mmSuv39H1-Y67A	Expression vector of mouse SUV39H1, methylated H3K9 binding mutant (Y67A).
RDB15891	pCAG-FLAG-IRESpuro (NRI)-mmSuv39H1-4A	Expression vector of mouse SUV39H1, nucleic acid-binding defective mutant (R84A, K87A, K91A, R95A).
RDB15890	pCAG-FLAG-IRESpuro (NRI)-mmSuv39H1-H324L	Expression vector of mouse SUV39H1, SET domain mutant (H324L).
RDB15889	pCAG-FLAG-IRESpuro (NRI)-mmSuv39H1	Expression vector of mouse SUV39H1, wild type.
RDB15888	pMCs-FLAG-Suv39h1-R24,K27A-IRES-GFP	Retroviral expression vector of mouse SUV39H1, N-terminal mutant (R24A, K27A).
RDB15887	pMCs-FLAG-Suv39h1-deltaN-IRES-GFP	Retroviral expression vector of mouse SUV39H1, N-terminal truncated mutant (delta 1-41).
RDB15886	pMCs-FLAG-Suv39h1-Y67A-4A-IRES-GFP	Retroviral expression vector of mouse SUV39H1, nucleic acid-binding defective mutant and methylated H3K9 binding mutant (R84A, K87A, K91A, R95A and Y67A).
RDB15885	pMCs-FLAG-Suv39h1-Y67A-IRES-GFP	Retroviral expression vector of mouse SUV39H1, methylated H3K9 binding mutant (Y67A).
RDB15884	pMCs-FLAG-Suv39h1-4A-IRES-GFP	Retroviral expression vector of mouse SUV39H1, nucleic acid-binding defective mutant (R84A, K87A, K91A, R95A).
RDB15883	pMCs-FLAG-Suv39h1-IRES-GFP	Retroviral expression vector of mouse SUV39H1, wild type.
RDB15882	pGEX6P-3-SUV39H1(39-105)-Y67A	Expression vector of mouse SUV39H1, chromodomain (residues 39-105), methylated H3K9 binding mutant (Y67A).
RDB15881	pGEX6P-3-SUV39H1(39-105)-4A	Expression vector of mouse SUV39H1, chromodomain (residues 39-105), nucleic acid-binding defective mutant (R84A, K87A, K91A, R95A).
RDB15880	pGEX6P-3-SUV39H1(39-105)	Expression vector of mouse SUV39H1, chromodomain (residues 39-105).

(1) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.

webcatalog20240727.tab

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number	Clone name	Vector	Sequence		Status
Catalog number	Clone name	Vector	5' terminal EST, submitted in DDBJ⁽¹⁾	3' terminal EST, submitted in DDBJ⁽¹⁾	Status
MCH056548	H3141G04	pSPORT1	BG087679	BG074981
MCH042170	H3105H02	pSPORT1	BG084777	BG072025

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_2024May11.csv

Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search	[map around Gene ID 20937] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.

2024.09.29

Mus_musculus_gene_info230514.csv - RDB_mmu_GIxxxxxxxxx_html_240727.pl