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RIKEN DNA Bank Mouse Resource - Sox4

Gene ID NCBI Gene 20677 |  KEGG mmu:20677
Gene Symbol Sox4
Protein Name SRY (sex determining region Y)-box 4
Synonyms Sox-4

Link

Ortholog resource in our bank

  Sox4

External dsatabase

mouse Sox4

Individualy Deposited Resource

Catalog number Name of Resource Description CDS comparison
Refered (NCBI mRNA) CDS status(1)
RDB17310 CSII-EF-IRES2-Venus_mSOX4 Lentivirus expression vector of mouse Sox4.    

(1) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.

webcatalog20240727.tab

Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 20677] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.

2025.02.20

Mus_musculus_gene_info230514.csv - RDB_mmu_GIxxxxxxxxx_html_240727.pl