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RIKEN DNA Bank Mouse Resource - Sox2

Gene ID NCBI Gene 20674 |  KEGG mmu:20674
Gene Symbol Sox2
Protein Name SRY (sex determining region Y)-box 2
Synonyms Sox-2|lcc|ysb
Featured content Signaling pathways regulating pluripotency of stem cells (mouse)
Featured content Hippo signaling (mouse)

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Ortholog resource in our bank

  Sox2

External dsatabase

mouse Sox2

Individualy Deposited Resource

Catalog number Name of Resource Description CDS comparison
Refered (NCBI mRNA) CDS status(1)
RDB13379 pGF-mSox2-ONL Lentiviral reporter plasmid of mouse Sox2 by the Orange Nano-lantern.    
RDB13138 PB-TAC-WTSI piggyBac transposon system for dox-inducible iPS cell generation (WTSI cassette with mCherry reporter)    
RDB13137 PB-TAC-EB-C5 piggyBac transposon system for dox-inducible iPS cell generation (EB-C5 cassette with mCherry reporter)    
RDB13136 PB-TAC-STEMCCA piggyBac transposon system for dox-inducible iPS cell generation (STEMCCA cassette with mCherry reporter)    
RDB13135 PB-TAC-OK+9MS piggyBac transposon system for dox-inducible iPS cell generation (OK+9MS cassette with mCherry reporter)    
RDB13134 PB-TAC-MKOS piggyBac transposon system for dox-inducible iPS cell generation (MKOS cassette with mCherry reporter)    
RDB13133 PB-TAC-OKMS piggyBac transposon system for dox-inducible iPS cell generation (OKMS cassette with mCherry reporter)    
RDB13132 PB-TAC-OSKM piggyBac transposon system for dox-inducible iPS cell generation (OSKM cassette with mCherry reporter)    
RDB12962 CSIV-TRE-mSox2-CMV-KT Lentivirus vector plasmid of mouse Sox2 driven by Tet-responsive promoter and hKO1-2A-rtTA driven by CMV promoter.    
RDB12956 CSII-EF-mSox2-IRES2-Venus Lentivirus vector plasmid of mouse Sox2 with Venus fluorescent protein marker driven by EF-1 alpha promoter.    
RDB12954 CSIV-CMV-mOKS-IRES2-Venus Lentivirus vector plasmid of mouse Oct3/4, Klf4 and Sox2 with Venus fluorescent protein marker driven by CMV promoter.    
RDB12121 pBRCMhCMV*1-Sox2-IZ Expression clone of mouse Sox2    
RDB11857 pPBCAG-Sox2/1-IB(2) piggyBac expression vector contains a loxP site upstream of a mutant mSox2::mSox1 chimeric gene. CAG promoter and BSD.    
RDB11853 pPB-hCMV*1-Sox2-pA piggyBac expression vector of mSox2. TRE and a min-CMV promoter.    
RDB11844 pPBCAG-Sox2/1M13R-IB The piggyBac expression vector of mutant mSox2::mSox18 chimeric gene. CAG promoter and BSD.    
RDB11843 pPBCAG-Sox2/1M12R-IB The piggyBac expression vector of mutant mSox2::mSox18 chimeric gene. CAG promoter and BSD.    
RDB11838 pPBCAG-Sox2M13-IB piggyBac expression vector contains a loxP site upstream of the mutant mSox2 gene. CAG promoter and BSD.    
RDB11837 pPBCAG-Sox2M12-IB piggyBac expression vector contains a loxP site upstream of the mutant mSox2 gene. CAG promoter and BSD.    
RDB11836 pPBCAG-Sox2M11-IB piggyBac expression vector contains a loxP site upstream of the mutant mSox2 gene. CAG promoter and BSD.    
RDB11825 pPBCAG-Sox2/17M8R-IB piggyBac expression vector contains a loxP site upstream of the mutant mSox2::mSox17 chimeric gene. CAG promoter and BSD.    
RDB11824 pPBCAG-Sox2/17wt-IB piggyBac expression vector contains a loxP site upstream of mSox2::mSox17 chimeric gene. CAG promoter and BSD.    
RDB11822 pPBCAG-Sox2/11M8R-IB piggyBac expression vector contains a loxP site upstream of the mutant mSox2::mSox11 chimeric gene. CAG promoter and BSD.    
RDB11819 pPBCAG-Sox2/9M8R-IB piggyBac expression vector contains a loxP site upstream of mutant mSox2::mSox9 chimeric gene. CAG promoter and BSD.    
RDB11818 pPBCAG-Sox2/9wt-IB piggyBac expression vector contains a loxP site upstream of mSox2::mSox9 chimeric gene. CAG promoter and BSD.    
RDB11795 pPBCAG-mSox2M6-IB piggyBac expression vector containing a loxP site upstream of the mutant mSox2 gene. CAG promoter and BSD.    
RDB11792 pPBCAG-mSox2M10-IB piggyBac expression vector containing a loxP site upstream of the mutant mSox2 gene. CAG promoter and BSD.    
RDB11790 pPBCAG-mSox2M9-IB piggyBac expression vector containing a loxP site upstream of the mutant mSox2 gene. CAG promoter and BSD.    
RDB11788 pPBCAG-mSox2M8-IB piggyBac expression vector containing a loxP site upstream of the mutant mSox2 gene. CAG promoter and BSD.    
RDB11786 pPBCAG-mSox2M7-IB piggyBac expression vector containing a loxP site upstream of the mutant mSox2 gene. CAG promoter and BSD.    
RDB11784 pPBCAG-mSox2M5-IB piggyBac expression vector containing a loxP site upstream of the mutant mSox2 gene. CAG promoter and BSD.    
RDB11782 pPBCAG-mSox2M4-IB piggyBac expression vector containing a loxP site upstream of the mutant mSox2 gene. CAG promoter and BSD.    
RDB11780 pPBCAG-mSox2M3-IB piggyBac expression vector containing a loxP site upstream of the mutant mSox2 gene. CAG promoter and BSD.    
RDB11778 pPBCAG-mSox2M2-IB piggyBac expression vector containing a loxP site upstream of the mutant mSox2 gene. CAG promoter and BSD.    
RDB11776 pPBCAG-mSox2M1-IB piggyBac expression vector containing a loxP site upstream of the mutant mSox2 gene. CAG promoter and BSD.    
RDB11639 pPBCAG-Oct3P2ASox2-pA piggyBac expression vector contains mOct3/4::P2A::mSox2 driven by a CAG promoter.    
RDB11584 pPBCAG-Oct3P2ASox2-IP piggyBac expression vector of mOct3/4::P2A::mSox2. CAG promoter and puromycin resistance gene.    
RDB10779 pBR-PyCAG-Sox21318-IP Expression clone of mouse Sox2    
RDB08514 CSII-CMV-mSox2-IRES-Venus Lentivirus vector plasmid of mouse Sox2 with Venus fluorescent protein marker driven by CMV promoter.    
RDB07095 pSRR2 tk-luc Oct-Sox enhancer carrying reporter derived from Sox2.    

(1) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.

webcatalog20240727.tab

Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 20674] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.

2026.03.19

Mus_musculus_gene_info230514.csv - RDB_mmu_GIxxxxxxxxx_html_240727.pl