RIKEN DNA Bank Mouse Resource - Six1
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LinkOrtholog resource in our bankSix1 External dsatabase mouse Six1 |
Individualy Deposited Resource
| Catalog number | Name of Resource | Description | CDS comparison | |
|---|---|---|---|---|
| Refered (NCBI mRNA) | CDS status(1) | |||
| RDB05827 | pAxCALNLfmSix1it2 | Shuttle vector to generate recombinant adenovirus harbouring mouse Six1 | ||
| RDB05826 | pAxCAfmSix1it2 | Shuttle vector to generate recombinant adenovirus harbouring mouse Six1 | ||
| RDB05814 | AxCALNLfmSix1it2 | Recombinant adenovirus expressing mouse Six1 | ||
| RDB05813 | AxCAfmSix1it2 | Recombinant adenovirus expressing mouse Six1 | ||
| RDB05730 | pf Six1 | Expression vector of mouse Six1 | ||
(1) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.
webcatalog20240727.tab
NIA/NIH Mouse cDNA Clone
Plasmid request [in Japanese] [in English]
| Catalog number | Clone name | Vector | Sequence | Status | |
|---|---|---|---|---|---|
| 5' terminal EST, submitted in DDBJ(1) | 3' terminal EST, submitted in DDBJ(1) | ||||
| MCH108150 | H4070G06 | pSPORT1 | BQ561514 | BQ561513 | |
♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.
NIAmouse22k_2024May11.csv
Mouse BAC clone
Clone request [in Japanese] [in English]
| BAC clone search | [map around Gene ID 20471] (link to our BAC browser) |
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♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.
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2024.09.28
Mus_musculus_gene_info230514.csv - RDB_mmu_GIxxxxxxxxx_html_240727.pl