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RIKEN DNA Bank Mouse Resource - Shh

Gene ID NCBI Gene 20423 |  KEGG mmu:20423
Gene Symbol Shh
Protein Name sonic hedgehog
Synonyms 9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081|ShhNC
Featured content Hedgehog signaling (mouse)
Featured content Axon guidance - mouse
Ortholog resource in our bank

  Shh

External dsatabase

  KEGG gene

  KEGG Ortholog

  NCBI Gene

Individualy Deposited Resource

Catalog number Name of Resource Description
RDB17896 mouse MACS1-luc2 Luciferase reporter of the C57BL/6 mouse Shh enhancer, MACS1.
RDB17897 spret MACS1-luc2 Luciferase reporter of the Western Mediterranean mouse (Mus spretus) Shh enhancer, MACS1.
RDB17900 mouse SLGE-luc2 Luciferase reporter of the C57BL/6 mouse Shh enhancer, SLGE.
RDB17901 spret SLGE-luc2 Luciferase reporter of the Western Mediterranean mouse (Mus spretus) Shh enhancer, SLGE.

webcatalog20220516.tab

Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 20423] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.

2022.05.17

Mus_musculus_gene_info200108.csv - RDB_mmu_GIxxxxxxxxx_html_220215.pl