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RIKEN DNA Bank Mouse Resource - Cxcl12

Gene ID NCBI Gene 20315 |  KEGG mmu:20315
Gene Symbol Cxcl12
Protein Name chemokine (C-X-C motif) ligand 12
Synonyms Pbsf|Scyb12|Sdf1|Tlsf|Tpar1
Ortholog resources KEGG ortholog (KEGG orthology K10031) in the DNA Bank
Featured content NF-kappa B signaling pathway (mouse)
Featured content Axon guidance - mouse
Featured content Intestinal immune network for IgA production - mouse

  KEGG gene

  KEGG Ortholog

  NCBI Gene

Individualy Deposited Resource

Catalog number Name of Resource Description
RDB06778 mouse SDF-1 alpha cDNA Plasmid clone of mouse SDF-1 alpha cDNA
RDB06779 mouse SDF-1 beta cDNA Plasmid clone of mouse SDF-1 beta cDNA
RDB19180 pGEM-Teasy-CXCL12 Plasmid vector of mouse Cxcl12 (corresponding to 103-1139 nt of D21072).
RDB19182 pCAGGS-CXCL12-mCherry Expression vector of mouse Cxcl12.

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH049700 H3124E04 pSPORT1 BG086320 BG073593  
MCH107321 H4068F01 pSPORT1 BQ561149 BQ561148  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.


Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 20315] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.


Mus_musculus_gene_info200108.csv -