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RIKEN DNA Bank Mouse Resource - Pou5f1

Gene ID (NCBI) 18999
Gene Symbol Pou5f1
Protein Name POU domain, class 5, transcription factor 1
Synonyms NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4
Databases KEGG mmu:18999 |  NCBI Gene 18999
Featured content Signaling pathways regulating pluripotency of stem cells (mouse)
Featured content Ortholog resources in the DNA Bank (KEGG orthology K09367)


Individualy Deposited Resource

Catalog number Name of Resource Description
RDB09193 pBlKS(-) Oct-3cDNA 21A Plasmid clone of mouse Oct3/4
RDB09330 Oct4IRESzeocinpA KO KO vector of mouse Oct4
RDB09609 pPyCAG-Oct3wt-IRESpuropA Expression clone of mouse Oct-3/4
RDB09895 pOct4-luc Reporter construct of mouse Oct3/4 (0.5 kb).
RDB10471 pCAG-CY-Oct3 Expression clone of mouse Oct3
RDB10551 pPyCAG-EGFPOct3GR-IP Expression clone of EGFP-mouse Oct3wt-GR fusion
RDB10752 pOct4-luc (-285) Reporter construct of mouse Oct3/4 (0.3 kb).
RDB10753 pOct4-luc (-2177) Reporter construct of mouse Oct3/4 (2.2 kb).
RDB10754 pOct4-luc (-1281) Reporter construct of mouse Oct3/4 (1.3 kb).
RDB10986 pOct4-luc (-1938) Reporter construct of mouse Oct3/4 (1.9 kb).
RDB12115 pPthc-Oct3/4 Exchange vector to introduce Oct3 into the ROSA locus
RDB13378 pRZ-mOct4-CNL Lentiviral reporter plasmid of mouse Oct4 by the Cyan Nano-lantern.

RDB_org_190226.csv


NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH011369 H3028H01 pSPORT1 BG078528 BG065240  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_170401.csv


Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 18999] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.


2019.04.23

Mus_musculus_gene_info171028.csv - RDB_mmu_GIxxxxxxxxx_html_190131.pl