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RIKEN DNA Bank Mouse Resource - Pdha1

Gene ID NCBI Gene 18597 |  KEGG mmu:18597
Gene Symbol Pdha1
Protein Name pyruvate dehydrogenase E1 alpha 1
Synonyms Pdha-1
Featured content HIF-1 signaling pathway - mouse

Link

Ortholog resource in our bank

  Pdha1

External dsatabase

mouse Pdha1

Individualy Deposited Resource

Catalog number Name of Resource Description CDS comparison
Refered (NCBI mRNA) CDS status(1)
RDB21097 CAG-Pdha1-PA-1D4 Expression vector of mouse Pdha1, PA and 1D4 tag at C-terminus. CAG promoter.    
RDB21095 Clgn-Pdha1-PA-1D4 Expression vector of mouse Pdha1, PA and 1D4 tag at C-terminus. Clgn promoter.    

(1) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.

webcatalog20240727.tab

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH027351 H3068G07 pSPORT1 BG081761 BG068736  
MCH017302 H3043E06 pSPORT1 BG066484  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_2024May11.csv

Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 18597] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.

2025.12.18

Mus_musculus_gene_info230514.csv - RDB_mmu_GIxxxxxxxxx_html_240727.pl