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RIKEN DNA Bank Mouse Resource - Lig1

Gene ID (NCBI) 16881
Gene Symbol Lig1
Protein Name ligase I, DNA, ATP-dependent
Synonyms AL033288|LigI
Databases KEGG mmu:16881 |  NCBI Gene 16881
Featured content DNA repair (mouse)
Featured content Ortholog resources in the DNA Bank (KEGG orthology K10747)


Individualy Deposited Resource

Catalog number Name of Resource Description
RDB15902 pL-CRISPR.EFS.tRFP_mLIG1 gRNA Mouse DNA ligase 1 (LIG1) knock out lentiviral vector.

RDB_org_170226.csv


NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH014530 H3036F10 pSPORT1 BG079173 BG065906  
MCH081629 H4004B05 pSPORT1 BQ550569  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_170401.csv


Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 16881] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.


2018.11.21

Mus_musculus_gene_info171028.csv - RDB_mmu_GIxxxxxxxxx_html_180123.pl