RIKEN DNA Bank Mouse Resource

RIKEN DNA Bank Mouse Resource - Fdft1

Gene ID	NCBI Gene 14137 \| KEGG mmu:14137
Gene Symbol	Fdft1
Protein Name	farnesyl diphosphate farnesyl transferase 1
Synonyms	SQS\|SS

Link

Ortholog resource in our bank

Fdft1

External dsatabase

mouse Fdft1

Individualy Deposited Resource

Catalog number	Name of Resource	Description	CDS comparison
Catalog number	Name of Resource	Description	Refered (NCBI mRNA)	CDS status⁽¹⁾
RDB02768	AxCAmSQUE (forward)	Recombinant adenovirus harboring mouse squalene epoxidase cDNA
RDB02535	pAxCAmSQUE (reverse)	Shuttle vector to generate rAd harboring mous SQUE
RDB02534	pAxCAmSQUE (forward)	Shuttle vector to produce rAd expressing mous squalene epoxidase (SQUE)
RDB01624	pMMSS-2	Plasmid clone of mouse squalene synthase cDNA

(1) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.

webcatalog20240727.tab

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number	Clone name	Vector	Sequence		Status
Catalog number	Clone name	Vector	5' terminal EST, submitted in DDBJ⁽¹⁾	3' terminal EST, submitted in DDBJ⁽¹⁾	Status
MCH029379	H3073H11	pSPORT1	BG082232	BG069211

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_2024May11.csv

Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search	[map around Gene ID 14137] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.

2024.10.02

Mus_musculus_gene_info230514.csv - RDB_mmu_GIxxxxxxxxx_html_240727.pl