RIKEN DNA Bank Mouse Resource

RIKEN DNA Bank Mouse Resource - Ephb2

Gene ID	NCBI Gene 13844 \| KEGG mmu:13844
Gene Symbol	Ephb2
Protein Name	Eph receptor B2
Synonyms	Cek5\|Drt\|ETECK\|Erk\|Hek5\|Nuk\|Prkm5\|Qek5\|Sek3\|Tyro5
Featured content	Axon guidance - mouse

Link

Ortholog resource in our bank

Ephb2

External dsatabase

mouse Ephb2

Individualy Deposited Resource

Catalog number	Name of Resource	Description	CDS comparison
Catalog number	Name of Resource	Description	Refered (NCBI mRNA)	CDS status⁽¹⁾
RDB07800	p3xFLAG-CMV10-mephrinB2	Expression vector of mouse EphB2
RDB07799	pCAcc-mephrinB2	Expression vector of mouse EphB2
RDB07798	pWEAxCAmephrinB2-F/RGD(L)	Shuttle vector to generate rAd of mouse EphB2

(1) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.

webcatalog20240727.tab

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number	Clone name	Vector	Sequence		Status
Catalog number	Clone name	Vector	5' terminal EST, submitted in DDBJ⁽¹⁾	3' terminal EST, submitted in DDBJ⁽¹⁾	Status
MCH105751	H4064G07	pSPORT1	BQ560512	BQ560511
MCH106521	H4066F01	pSPORT1		BQ560806

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_2024May11.csv

Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search	[map around Gene ID 13844] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.

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Mus_musculus_gene_info230514.csv - RDB_mmu_GIxxxxxxxxx_html_240727.pl