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RIKEN DNA Bank Mouse Resource - Ddb1

Gene ID (NCBI) 13194
Gene Symbol Ddb1
Protein Name damage specific DNA binding protein 1
Synonyms 127kDa|AA408517|p127-Ddb1
Databases KEGG link 01 |  NCBI Gene link 01


NIA/NIH Mouse cDNA Clone link 01

Catalog number Clone name Vector Sequence
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH002876 H3007D04 pSPORT1 CK334158 BG063449
MCH003304 H3008E08 pSPORT1 BG077007 BG063543
MCH056947 H3142G03 pSPORT1 BG087720 BG075054
MCH088956 H4022G12 pSPORT1 BQ557035
MCH102123 H4055F03 pSPORT1 BQ559014

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

J:\Perl_src_\csv_set\NIAmouse22k_150728.csv


Mouse BAC clone link 01

BAC clone search [map around Gene ID 13194] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.


2015.11.06

J:\Perl_src_\csv_set\Mus_musculus_gene_info140110 - RDB_mmu_GIxxxxxxxxx_html_151106.pl