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RIKEN DNA Bank Mouse Resource - Ctsd

Gene ID (NCBI) 13033
Gene Symbol Ctsd
Protein Name cathepsin D
Synonyms CD|CatD
Databases KEGG mmu:13033 |  NCBI Gene 13033
Featured content Sphingolipid signaling pathway (mouse)
Featured content Lysosome (mouse)
Featured content Apoptosis - mouse
Featured content Ortholog resources in the DNA Bank (KEGG orthology K01379)


NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH003374 H3008H06 pSPORT1 CK334207  
MCH055377 H3138H09 pSPORT1 BG087382 BG074759  
MCH055378 H3138H10 pSPORT1 BG087383 BG074760  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_170401.csv


Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 13033] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.


2018.03.01

Mus_musculus_gene_info171028.csv - RDB_mmu_GIxxxxxxxxx_html_180123.pl