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RIKEN DNA Bank Mouse Resource - Pcdha6

Gene ID NCBI Gene 12937 |  KEGG mmu:12937
Gene Symbol Pcdha6
Protein Name protocadherin alpha 6
Synonyms CNR|Cnr2|Crnr2
Ortholog resource in our bank

  Pcdha6


External dsatabase

  KEGG gene

  KEGG Ortholog

  NCBI Gene


NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH000979 H3002H11 pSPORT1 BG076470 BG063001  
MCH001258 H3003C10 pSPORT1 BG076589 BG063121  
MCH001299 H3003E03 pSPORT1 BG076604 BG063137  
MCH001321 H3003F01 pSPORT1 BG076612 BG063145  
MCH001603 H3004A03 pSPORT1 BG076642 BG063178  
MCH001780 H3004H12 pSPORT1 BG076715 BG063258  
MCH021777 H3054H09 pSPORT1 BG080548 BG067484  
MCH000976 H3002H08 pSPORT1 BG062998  
MCH001750 H3004G06 pSPORT1 BG063241  
MCH000526 H3001F06 pSPORT1  
MCH001778 H3004H10 pSPORT1  
MCH002026 H3005B02 pSPORT1  
MCH002435 H3006B11 pSPORT1  
MCH002456 H3006C08 pSPORT1  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.

NIAmouse22k_2023May31.csv


Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 12937] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.


2023.09.23

Mus_musculus_gene_info230514.csv - RDB_mmu_GIxxxxxxxxx_html_220215.pl