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RIKEN DNA Bank Mouse Resource - Cbx5

Gene ID (NCBI) 12419
Gene Symbol Cbx5
Protein Name chromobox 5
Synonyms 2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha
Databases KEGG link 01 |  NCBI Gene link 01
Featured content Ortholog resources in the DNA Bank (KEGG orthology K11587)

NIA/NIH Mouse cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence Status
5' terminal EST, submitted in DDBJ(1) 3' terminal EST, submitted in DDBJ(1)
MCH012926 H3032F06 pSPORT1 CK334465 CK334464  
MCH011675 H3029D03 pSPORT1 BG078574 BG065287  
MCH044407 H3111A07 pSPORT1 BG085279 BG072481  
MCH086500 H4016E04 pSPORT1 BQ552548  
MCH102473 H4056D01 pSPORT1 BQ559129 BQ559128  

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
(1) Actual EST sequence either 5' or 3' terminal end. Data were submitted to the DNA Data Bank of Japan (DDBJ).
♦ NIA/NIH Mouse cDNA clone was deposited by Dr Minoru Ko (Tanaka et al., PNAS 97, 9127-9132, 2000. VanBuren V, et al. Genome Research 12, 1999-2003, 2002) at the National Institute on Aging, the National Institutes of Health, U.S.A.


Mouse BAC clone

Clone request [in Japanese] [in English]

BAC clone search [map around Gene ID 12419] (link to our BAC browser)

♦ Every single our BAC clones have analyzed their terminal end sequences to map on the genome. Most of them are assigned by both ends and indicated with blue line on the genome browser (they likely contain the region). Others are assigned only by a single end and indicated with red line on the genome browser (containing piece is unsure).
♦ Reasons that we did not use the other end result for mapping are: (1) Data was not suitable for BLAST analysis (short read, repeats, no data or such stuff); (2) Result of BLAST analysis is unlikely [two ends are, too far away (>0.3 Mb), distinct chromosome, same orientation, or such incomprehensible].
♦ Full length sequence is not available.


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