RIKEN DNA Bank Human Resource

RIKEN DNA Bank Human Resource - SPHK2

Gene ID	NCBI Gene 56848 \| KEGG hsa:56848
Gene Symbol	SPHK2
Protein Name	sphingosine kinase 2
Synonyms	SK 2\|SK-2\|SPK 2\|SPK-2
Featured content	Sphingolipid signaling pathway (human)
Featured content	Kinases Included in Myristoylated Kinase Library (human) in Boehm JS Cell 129 (6):1065-1079 (2007). PMID: 17574021.

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Ortholog resource in our bank

SPHK2

External database

human SPHK2

Individualy Deposited Resource

Catalog number	Name of Resource	Description	CDS comparison
Catalog number	Name of Resource	Description	Refered (NCBI mRNA)	CDS status⁽¹⁾
RDB20442	pcDNA3.1-SphK2-V5-6His	Expression vector of human sphingosine kinase 2 (SphK2). V5His6-tag at C-terminus.

(1) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.

webcatalog20240727.tab

Genome Network Project (GNP) Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number	Clone name	Vector	Sequence submitted (DDBJ)⁽¹⁾	CDS comparison
Catalog number	Clone name	Vector	Sequence submitted (DDBJ)⁽¹⁾	Refered (NCBI mRNA)	CDS status⁽²⁾
HGX005427	IRAK013J11	pCMV-SPORT6	BC010671	NM_020126	Partial/var
HGY087424	IRAL018J08	pOTB7	BC006161	NM_020126

(1) Actual nucleotide sequence of this clone submitted to the DNA Data Bank of Japan (DDBJ)/EMBL/Genbank.
(2) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.
♦ Full, whole CDS.
♦ Full/var, whole CDS though with ins/dels or substitution.
♦ Partial, partial CDS
♦ Partial/var, partial CDS though with ins/dels or substitution.

GNP_full_IRAK_2024May11.csv
GNP_full_IRAL_2024May11.csv

Genome Network Project (GNP) Gateway® Entry Clone

Plasmid request [in Japanese] [in English]

W series

Catalog number	Clone name	Vector	Constructed from⁽¹⁾		CDS comparison		Status
Catalog number	Clone name	Vector	Clone ID	Sequence (DDBJ)	Refered mRNA	CDS status	Status
HGE008267	W01A020L03	pENTR-TOPO	IRAL018J08	BC006161	NM_020126

♦ W series clone contains a stop codon.

GNP_entry_W01A_2024May11.csv

♦ Full length sequence is not available. ORF information might be updated by now and thus actual insert could differ from the latest version.
♦ GNP Gateway® entry clone was constructed from the open reading frame (ORF) amplified by PCR.
(1) ID and associated information of the cDNA clone used as a template of PCR.

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Homo_sapiens_gene_info230514.csv - RDB_hum_GIxxxxxxxxx_html_240727.pl