RIKEN DNA Bank Human Resource

RIKEN DNA Bank Human Resource - SMPD4

Gene ID	NCBI Gene 55627 \| KEGG hsa:55627
Gene Symbol	SMPD4
Protein Name	sphingomyelin phosphodiesterase 4
Synonyms	NEDMABA\|NEDMEBA\|NET13\|NSMASE-3\|NSMASE3\|SKNY

Ortholog resource in our bank

  SMPD4

External database

  KEGG gene

  KEGG Ortholog

  NCBI Gene

Genome Network Project (GNP) Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number	Clone name	Vector	Sequence submitted (DDBJ)⁽¹⁾	CDS comparison
Catalog number	Clone name	Vector	Sequence submitted (DDBJ)⁽¹⁾	Refered (NCBI mRNA)	CDS status⁽²⁾
HGX033798	IRAK084I06	pCMV-SPORT6	BC040941	NM_017951	Full/var
HGX056066	IRAK140C18	pCMV-SPORT6	BC064947	NM_017951	Full/var

(1) Actual nucleotide sequence of this clone submitted to the DNA Data Bank of Japan (DDBJ)/EMBL/Genbank.
(2) CDS status was determined by comparing the clone sequence with NCBI RefSeq mRNA.
♦ Full, whole CDS.
♦ Full/var, whole CDS though with ins/dels or substitution.
♦ Partial, partial CDS
♦ Partial/var, partial CDS though with ins/dels or substitution.

GNP_full_IRAK_2023Apr24.csv
GNP_full_IRAL_2023Apr24.csv

NRCD Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number	Clone name	Vector	CDS comparison
	Clone name	Vector	Refered mRNA⁽¹⁾	CDS status
	5'-terminal sequence⁽²⁾
HKR333777	RBb34H09	pGCAP1	NM_017751.2
HKR333777	GATGGATCCCACAGGTGAGTGGCGCGGGATGCGCGCCTGAGACGGTCCGGCGCCCTGGGG
HKR388032	RBd70B08	pGCAP10	NM_017751.2
HKR388032	GGGCGCCGTGGCGGAATGGCGGCTTCCATCTCTGAGGCGAGCGACGCTATGGATCCCACA
HKR396552	RBd91G08	pGCAP10	NM_017751.2	No cds
HKR396552	GGACGACTTTCGGCGCCGTGGCGGAATGGCGGCTTCCATCTCTGAGGCGAGCGACGCTAT
HKR397209	RBd93A09	pGCAP10	NM_017751.2
HKR397209	GACTTTCGGCGCCGTGGCGGAATGGCGGCTTCCATCTCTGAGGCGAGCGACGCTATGGAT
HKR405252	RBdS013C04	pGCAP10	NM_017751.2
HKR405252	GACTTTCGGCGCCGTGGCGGAATGGCGGCTTCCATCTCTGAGGCGAGCGACGCTATGGAT
HKR430004	RBdS075A04	pGCAP10	NM_017751.2	No cds
HKR430004	GGAGCGACGCTATGGATCCCACAGTGGTTTGCTAAGAAGGCCATTTTCAACTCTCCACTG

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
♦ These clones have very long transcript since they were constructed by the method "Vector Capping."
(1) Refference sequence either NCBI mRNA or DDBJ DNA identified by the 5' terminal sequence.
(2) 5' terminal sequence of the insert provided from the depositor.

NRCDhumcloneList_AR_2023May03.csv
NRCDhumcloneList_RB_2023May03.csv

2023.05.10

Homo_sapiens_gene_info200108.csv - RDB_hum_GIxxxxxxxxx_html_230504.pl