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RIKEN DNA Bank Human Resource - SLC39A1

Gene ID NCBI Gene 27173 |  KEGG hsa:27173
Gene Symbol SLC39A1
Protein Name solute carrier family 39 member 1
Synonyms ZIP1|ZIRTL
Ortholog resource in our bank

  SLC39A1

External database

  KEGG gene

  KEGG Ortholog

  NCBI Gene

Genome Network Project (GNP) Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence submitted (DDBJ)(1) CDS comparison
Refered (NCBI mRNA) CDS status(2)
HGY081919 IRAL004N07 pOTB7 BC002563 NM_014437 Full
HGY083984 IRAL009P24 pOTB7 BC003152 NM_014437 Full/var
HGY088089 IRAL020D17 pOTB7 BC007886 NM_014437 Full
HGY090121 IRAL025F01 pOTB7 BC014303 NM_014437

(1) Actual nucleotide sequence of this clone submitted to the DNA Data Bank of Japan (DDBJ)/EMBL/Genbank.
(2) CDS status was determined by comparing the clone sequence with NCBI RefSeq mRNA.
♦ Full, whole CDS.
♦ Full/var, whole CDS though with ins/dels or substitution.
♦ Partial, partial CDS
♦ Partial/var, partial CDS though with ins/dels or substitution.

GNP_full_IRAK_2023Apr24.csv
GNP_full_IRAL_2023Apr24.csv

Genome Network Project (GNP) Gateway® Entry Clone

Plasmid request [in Japanese] [in English]

W series

Catalog number Clone name Vector Constructed from(1) CDS comparison Status
Clone ID Sequence (DDBJ) Refered mRNA CDS status
HGE037234 W01A093B10 pENTR-TOPO IRAL004N07 BC002563 NM_014437  
HGE037236 W01A093B12 pENTR-TOPO IRAL004N07 BC002563 NM_014437  
HGE037238 W01A093B14 pENTR-TOPO IRAL004N07 BC002563 NM_014437  
HGE037242 W01A093B18 pENTR-TOPO IRAL004N07 BC002563 NM_014437  
HGE037244 W01A093B20 pENTR-TOPO IRAL004N07 BC002563 NM_014437  
HGE037248 W01A093B24 pENTR-TOPO IRAL004N07 BC002563 NM_014437  
HGE037529 W01A093N17 pENTR-TOPO IRAL025F01 BC014303 NM_014437  
HGE037533 W01A093N21 pENTR-TOPO IRAL025F01 BC014303 NM_014437  
HGE046515 W01A116E19 pENTR-TOPO IRAL025F01 BC014303 NM_014437  
HGE046545 W01A116G01 pENTR-TOPO IRAL004N07 BC002563 NM_014437  

♦ W series clone contains a stop codon.

GNP_entry_W01A_2023Apr24.csv

♦ Full length sequence is not available. ORF information might be updated by now and thus actual insert could differ from the latest version.
♦ GNP Gateway® entry clone was constructed from the open reading frame (ORF) amplified by PCR.
(1) ID and associated information of the cDNA clone used as a template of PCR.

NRCD Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector CDS comparison Status
Refered mRNA(1) CDS status
5'-terminal sequence(2)
HKR047649 ARe19C01 pKA1U5 NM_014437.3  
GGTAGTGAGACCCTCGCGAGGTCTGAGAGTCACTGGAGCTACCAGAAGCATCATGGGGCC
HKR174431 ARi36B07 pGCAP10 NM_014437.3  
AGTGAGACCCTCGCGAGGTCTGAGAGTCACTGGAGCTACCAGAAGCATCATGGGGCCCTG
HKR174508 ARi36E12 pGCAP10 NM_014437.3  
AGTGAGACCCTCGCGAGGTCTGAGAGTCACTGGAGCTACCAGAAGCATCATGGGGCCCTG
HKR183777 ARi59H09 pGCAP10 NM_014437.3  
GGTAGTGAGACCCTCGCGAGGTCTGAGAGTCACTGGAGCTACCAGAAGCATCATGGGGCC
HKR185780 ARi64H12 pGCAP10 NM_014437.3  
HKR222302 ARiS055M14 pGCAP10 NM_014437.3  
GAGGCCGGAAGCGCGCGGAGACCATGTAGTGAGACCCTCGCGAGGTCTGAGAGTCACTGG
HKR376978 RBd42H10 pGCAP10 NM_014437.3  
GAGTGAGACCCTCGCGAGGTCTGAGAGTCACTGGAGCTACCAGAAGCATCATGGGGCCCT

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
♦ These clones have very long transcript since they were constructed by the method "Vector Capping."
(1) Refference sequence either NCBI mRNA or DDBJ DNA identified by the 5' terminal sequence.
(2) 5' terminal sequence of the insert provided from the depositor.

NRCDhumcloneList_AR_2023May03.csv
NRCDhumcloneList_RB_2023May03.csv

2023.05.07

Homo_sapiens_gene_info200108.csv - RDB_hum_GIxxxxxxxxx_html_230504.pl