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RIKEN DNA Bank Human Resource - SMG5

Gene ID NCBI Gene 23381 |  KEGG hsa:23381
Gene Symbol SMG5
Protein Name SMG5 nonsense mediated mRNA decay factor
Synonyms EST1B|LPTS-RP1|LPTSRP1|SMG-5
Ortholog resource in our bank

  SMG5

External database

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  KEGG Ortholog

  NCBI Gene

Genome Network Project (GNP) Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence submitted (DDBJ)(1) CDS comparison
Refered (NCBI mRNA) CDS status(2)
HGY018696 IRAK046M08 pBluescriptR BC038296 NM_015327
HGY084649 IRAL011K09 pOTB7 BC007453 NM_015327 Partial/var
HGY089104 IRAL022M16 pOTB7 BC007292 NM_015327 Partial/var

(1) Actual nucleotide sequence of this clone submitted to the DNA Data Bank of Japan (DDBJ)/EMBL/Genbank.
(2) CDS status was determined by comparing the clone sequence with NCBI RefSeq mRNA.
♦ Full, whole CDS.
♦ Full/var, whole CDS though with ins/dels or substitution.
♦ Partial, partial CDS
♦ Partial/var, partial CDS though with ins/dels or substitution.

GNP_full_IRAK_2023Apr24.csv
GNP_full_IRAL_2023Apr24.csv

Genome Network Project (GNP) Gateway® Entry Clone

Plasmid request [in Japanese] [in English]

M series

Catalog number Clone name Vector Constructed from(1) CDS comparison Status
Clone ID Sequence (DDBJ) Refered mRNA CDS status
HGE089631 M01C024B07 pDONR221 MGC01-G04 BC038296 ENST00000361813  
HGE089679 M01C024D07 pDONR221 MGC01-G04 BC038296 ENST00000361813  
HGE089727 M01C024F07 pDONR221 MGC01-G04 BC038296 ENST00000361813  
HGE089775 M01C024H07 pDONR221 MGC01-G04 BC038296 ENST00000361813  
HGE089823 M01C024J07 pDONR221 MGC01-G04 BC038296 ENST00000361813  
HGE089871 M01C024L07 pDONR221 MGC01-G04 BC038296 ENST00000361813  
HGE089919 M01C024N07 pDONR221 MGC01-G04 BC038296 ENST00000361813  
HGE089967 M01C024P07 pDONR221 MGC01-G04 BC038296 ENST00000361813  

♦ M series clone does not contain stop codon.

GNP_entry_M01C_2023Apr24.csv

♦ Full length sequence is not available. ORF information might be updated by now and thus actual insert could differ from the latest version.
♦ GNP Gateway® entry clone was constructed from the open reading frame (ORF) amplified by PCR.
(1) ID and associated information of the cDNA clone used as a template of PCR.

NRCD Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector CDS comparison Status
Refered mRNA(1) CDS status
5'-terminal sequence(2)
HKR432513 RBdS081E17 pGCAP10 NM_015327.2  
GGGCAGGcgGAgGAgGAGCTGTCgCGGGCAGCCGCCTCACgGCGATGGCGGCCGAGCaGG

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
♦ These clones have very long transcript since they were constructed by the method "Vector Capping."
(1) Refference sequence either NCBI mRNA or DDBJ DNA identified by the 5' terminal sequence.
(2) 5' terminal sequence of the insert provided from the depositor.

NRCDhumcloneList_AR_2023May03.csv
NRCDhumcloneList_RB_2023May03.csv

2023.05.08

Homo_sapiens_gene_info200108.csv - RDB_hum_GIxxxxxxxxx_html_230504.pl