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RIKEN DNA Bank Human Resource - SSB

Gene ID NCBI Gene 6741 |  KEGG hsa:6741
Gene Symbol SSB
Protein Name small RNA binding exonuclease protection factor La
Synonyms LARP3|La|La/SSB
Ortholog resource in our bank

  SSB

External database

  KEGG gene

  KEGG Ortholog

  NCBI Gene

Genome Network Project (GNP) Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence submitted (DDBJ)(1) CDS comparison
Refered (NCBI mRNA) CDS status(2)
HGX001869 IRAK004L05 pCMV-SPORT6 BC001289 NM_003142 Full
HGY094506 IRAL036E10 pDNR-LIB BC020818 NM_003142 Full

(1) Actual nucleotide sequence of this clone submitted to the DNA Data Bank of Japan (DDBJ)/EMBL/Genbank.
(2) CDS status was determined by comparing the clone sequence with NCBI RefSeq mRNA.
♦ Full, whole CDS.
♦ Full/var, whole CDS though with ins/dels or substitution.
♦ Partial, partial CDS
♦ Partial/var, partial CDS though with ins/dels or substitution.

GNP_full_IRAK_2023Apr24.csv
GNP_full_IRAL_2023Apr24.csv

Genome Network Project (GNP) Gateway® Entry Clone

Plasmid request [in Japanese] [in English]

W series

Catalog number Clone name Vector Constructed from(1) CDS comparison Status
Clone ID Sequence (DDBJ) Refered mRNA CDS status
HGE006721 W01A016N09 pENTR-TOPO IRAL036E10 BC020818 NM_003142  
HGE037604 W01A094A04 pENTR-TOPO IRAK004L05 BC001289 NM_003142  
HGE037943 W01A094O07 pENTR-TOPO IRAK004L05 BC001289 NM_003142  
HGE037953 W01A094O17 pENTR-TOPO IRAK004L05 BC001289 NM_003142  

♦ W series clone contains a stop codon.

GNP_entry_W01A_2023Apr24.csv

♦ Full length sequence is not available. ORF information might be updated by now and thus actual insert could differ from the latest version.
♦ GNP Gateway® entry clone was constructed from the open reading frame (ORF) amplified by PCR.
(1) ID and associated information of the cDNA clone used as a template of PCR.

NRCD Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector CDS comparison Status
Refered mRNA(1) CDS status
5'-terminal sequence(2)
HKR164954 ARi12G10 pGCAP10 NM_003142.3  
GGGAGCGCTTTAGGCTGGCCGGCGGCGCTGGGAGGTGGAGTCGTTGCTGTTGCTGTTTGT
HKR235248 ARiS088B24 pGCAP10 NM_003142.3  
GCGGAACCTTAAAGATAGCCGCAATGGCTGAAAATGGTGATAATGAAAAGATGGCTGCCC
HKR247533 ARiS118N21 pGCAP10 NM_003142.3  
GAGGCTGGNCNGCGGCGCTGGGAGGTGGAGTCGTTGCTGTTGCTGTTTGTGAGCCTGTGG
HKR249023 ARiS122J07 pGCAP10 NM_003142.3  
GGGAGCGCTTTAGGCTGGCCGGCGGCGCTGGGAGGTGGAGTCGTTGCTGTTGCTGTTTGT
HKR334124 RBb35F04 pGCAP1 NM_003142.3  
GGGAGTCGTTGCTGTTGCTGTTTGTGAGCCTGTGGCGCGGCTTCTGTGGGCCGGAACCTT
HKR334925 RBb37F05 pGCAP1 NM_003142.3  
AAATGTGATCTTCTTGGAGCGCTTTAGGCTGGCCGGCGGCGCTGGGAGGTGGAGTCGTTG
HKR392948 RBd82G04 pGCAP10 NM_003142.3  
TTCTTCTTGGAGCGCTTTAGGCTGGCCGGCGGCGCTGGGAGGTGGAGTCGTTGCTGTTGC
HKR452864 RBdS132C16 pGCAP10 NM_003142.3  
GACGGTCCCCATCTTCTTGGAGCGCTTTAGGCTGGCCGGCGGCGCTGGGAGGTGGAGTCG

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
♦ These clones have very long transcript since they were constructed by the method "Vector Capping."
(1) Refference sequence either NCBI mRNA or DDBJ DNA identified by the 5' terminal sequence.
(2) 5' terminal sequence of the insert provided from the depositor.

NRCDhumcloneList_AR_2023May03.csv
NRCDhumcloneList_RB_2023May03.csv

2023.05.07

Homo_sapiens_gene_info200108.csv - RDB_hum_GIxxxxxxxxx_html_230504.pl