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RIKEN DNA Bank Human Resource - SNRPD2

Gene ID NCBI Gene 6633 |  KEGG hsa:6633
Gene Symbol SNRPD2
Protein Name small nuclear ribonucleoprotein D2 polypeptide
Synonyms SMD2|SNRPD1|Sm-D2
Ortholog resource in our bank

  SNRPD2

External database

  KEGG gene

  KEGG Ortholog

  NCBI Gene

Genome Network Project (GNP) Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence submitted (DDBJ)(1) CDS comparison
Refered (NCBI mRNA) CDS status(2)
HGY080432 IRAL001B08 pOTB7 BC000486 NM_177542 Full
HGY083661 IRAL009C13 pOTB7 BC001930 NM_177542 Full

(1) Actual nucleotide sequence of this clone submitted to the DNA Data Bank of Japan (DDBJ)/EMBL/Genbank.
(2) CDS status was determined by comparing the clone sequence with NCBI RefSeq mRNA.
♦ Full, whole CDS.
♦ Full/var, whole CDS though with ins/dels or substitution.
♦ Partial, partial CDS
♦ Partial/var, partial CDS though with ins/dels or substitution.

GNP_full_IRAK_2023Apr24.csv
GNP_full_IRAL_2023Apr24.csv

Genome Network Project (GNP) Gateway® Entry Clone

Plasmid request [in Japanese] [in English]

M series

Catalog number Clone name Vector Constructed from(1) CDS comparison Status
Clone ID Sequence (DDBJ) Refered mRNA CDS status
HGE097647 M01C044B23 pDONR221 MGC11-G12 BC001930 NM_177542  
HGE097695 M01C044D23 pDONR221 MGC11-G12 BC001930 NM_177542  
HGE097743 M01C044F23 pDONR221 MGC11-G12 BC001930 NM_177542  
HGE097791 M01C044H23 pDONR221 MGC11-G12 BC001930 NM_177542  
HGE097839 M01C044J23 pDONR221 MGC11-G12 BC001930 NM_177542  
HGE097887 M01C044L23 pDONR221 MGC11-G12 BC001930 NM_177542  
HGE097935 M01C044N23 pDONR221 MGC11-G12 BC001930 NM_177542  
HGE097983 M01C044P23 pDONR221 MGC11-G12 BC001930 NM_177542  

♦ M series clone does not contain stop codon.

GNP_entry_M01C_2023Apr24.csv

♦ Full length sequence is not available. ORF information might be updated by now and thus actual insert could differ from the latest version.
♦ GNP Gateway® entry clone was constructed from the open reading frame (ORF) amplified by PCR.
(1) ID and associated information of the cDNA clone used as a template of PCR.

NRCD Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector CDS comparison Status
Refered mRNA(1) CDS status
5'-terminal sequence(2)
HKR057601 ARe44A01 pKA1U5 NM_004597.4  
GAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTGACCATCATGAGC
HKR061283 ARe53D11 pKA1U5 NM_004597.4  
TGAGGCAGCAGNANCGCGGTAGGAAACGGGAGTGCCCGTGAGAGCGCTANCTGACCATCA
HKR062026 ARe55B02 pKA1U5 NM_004597.4  
GGGAAACGGGAGTGAACGGAGAGCGTAGTGACCNTCNTGAGCCTCCTCAACAAGCCCAAG
HKR069275 ARe73D03 pKA1U5 NM_004597.4  
GGGGAGTGAACGGAGAGCGTAGTGACCATCATGNGCNTCCTCAACAAGCCCAAGAGTGAG
HKR078007 ARe95A07 pKA1U5 NM_004597.4  
GGTCCCGCCTCTCTCTCCTCAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAG
HKR079602 ARe99A02 pKA1U5 NM_004597.4  
GGGAGAGCGTAGTGACCATCATGAGCCTCCTCANCAAGCCCAAGAGTGAGATGACCCCAG
HKR178831 ARi47B07 pGCAP10 NM_004597.4  
GCTCTCTCCTCAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTGAC
HKR205581 ARiS013P21 pGCAP10 NM_004597.4  
GCTCCTCAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTGACCATC
HKR209341 ARiS023F21 pGCAP10 NM_004597.4  
GCTCTCTCTCCTCAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTG
HKR235512 ARiS088M24 pGCAP10 NM_004597.4  
GGGAGGAAACGGGAGTGAACGGAGAGCGTAGTGACCATCATGAGCCTCCTCAACAAGCCC
HKR264515 ARiS161E19 pGCAP10 NM_004597.4  
GCTCCTCAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTGACCATC
HKR264563 ARiS161G19 pGCAP10 NM_004597.4  
GNNCNNCNCGNANCANCNNCTCGGANGAAACGGGAGTGAANGGAGAGNGTNNNGACNATC
HKR326830 RBb17B06 pKA1U5 NM_004597.4  
ATCCTGGTCTCTCTCCTCAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCG
HKR332579 RBb31H11 pGCAP1 NM_004597.4  
NTGCCTCAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTGACCATC
HKR344522 RBb61F02 pGCAP1 NM_004597.4  
GAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTGACCATCATGAGC
HKR362058 RBd05C10 pGCAP10 NM_004597.4  
GGAAGTCACGGCCGGCGGGCATTTGGAAATAGCTTGTCATTTCCCTCCTTCAACCTGTAC
HKR364858 RBd12C10 pGCAP10 NM_004597.4  
GAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTGACCATCATGAGC
HKR365329 RBd13F09 pGCAP10 NM_004597.4  
GAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTGACCATCATGAGC
HKR369675 RBd24D03 pGCAP10 NM_004597.4  
GTCAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTGACCATCATGA
HKR372921 RBd32F01 pGCAP10 NM_004597.4  
GGGAAACGGGAGTGAACGGAGAGCGTAGTGACCATCATGAGCCTCCTCAACAAGCCCAAG
HKR373306 RBd33E10 pGCAP10 NM_004597.4  
GCCTCAGGCAGCGGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTGACCATCAT
HKR376060 RBd40C12 pGCAP10 NM_004597.4  
GGAAAGAACCGAAAAAAGGCTCGACGCTACCGTGTATGAGGAACTTTGATCCTTGCGGGC
HKR378877 RBd47D05 pGCAP10 NM_004597.4  
GAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTGACCATCATGAGC
HKR382504 RBd56E08 pGCAP10 NM_004597.4  
GCTCTCTCTCCTCAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTG
HKR392972 RBd82H04 pGCAP10 NM_004597.4  
GAGCAGGGGAAAGATGGCGGTGACGGGCTGGTTGGAGAGTCTGCGGACAGCCCAGAAGAC
HKR392973 RBd82H05 pGCAP10 NM_004597.4  
GAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTGACCATCATGAGC
HKR420482 RBdS051D10 pGCAP10 NM_004597.4  
GAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTGACCATCATGAGCCTCCTCAACA
HKR432749 RBdS081O13 pGCAP10 NM_004597.4  
GGGAAACGGGAGTGAACGGAGAGCGTAGTGACCATCATGAGCCTCCTCAACAAGCCCAAG
HKR444173 RBdS110H05 pGCAP10 NM_004597.4  
AAGTCCCGCCTCTCTCTCCTCAGGCAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGA

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
♦ These clones have very long transcript since they were constructed by the method "Vector Capping."
(1) Refference sequence either NCBI mRNA or DDBJ DNA identified by the 5' terminal sequence.
(2) 5' terminal sequence of the insert provided from the depositor.

NRCDhumcloneList_AR_2023May03.csv
NRCDhumcloneList_RB_2023May03.csv

2023.05.07

Homo_sapiens_gene_info200108.csv - RDB_hum_GIxxxxxxxxx_html_230504.pl