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RIKEN DNA Bank Human Resource - PRKAB1

Gene ID NCBI Gene 5564 |  KEGG hsa:5564
Gene Symbol PRKAB1
Protein Name protein kinase AMP-activated non-catalytic subunit beta 1
Synonyms AMPK|HAMPKb
Featured content Circadian clock (human)

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Ortholog resource in our bank

  PRKAB1

External database

human PRKAB1

Individualy Deposited Resource

Catalog number Name of Resource Description CDS comparison
Refered (NCBI mRNA) CDS status(1)
RDB07328 pGL4-phPRKAB1 Promoter collection, Human PRKAB1 promoter    

(1) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.

webcatalog20240727.tab

Genome Network Project (GNP) Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence submitted (DDBJ)(1) CDS comparison
Refered (NCBI mRNA) CDS status(2)
HGY080687 IRAL001L23 pOTB7 BC001007 NM_006253 Full
HGY080880 IRAL002D08 pOTB7 BC001056 NM_006253 Full
HGY084169 IRAL010H01 pOTB7 BC001823 NM_006253 Full

(1) Actual nucleotide sequence of this clone submitted to the DNA Data Bank of Japan (DDBJ)/EMBL/Genbank.
(2) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.
♦ Full, whole CDS.
♦ Full/var, whole CDS though with ins/dels or substitution.
♦ Partial, partial CDS
♦ Partial/var, partial CDS though with ins/dels or substitution.

GNP_full_IRAK_2024May11.csv
GNP_full_IRAL_2024May11.csv

Genome Network Project (GNP) Gateway® Entry Clone

Plasmid request [in Japanese] [in English]

W series

Catalog number Clone name Vector Constructed from(1) CDS comparison Status
Clone ID Sequence (DDBJ) Refered mRNA CDS status
HGE014347 W01A035O11 pENTR-TOPO IRAL001L23 BC001823 NM_006253  
HGE014351 W01A035O15 pENTR-TOPO IRAL001L23 BC001823 NM_006253  

♦ W series clone contains a stop codon.

GNP_entry_W01A_2024May11.csv

♦ Full length sequence is not available. ORF information might be updated by now and thus actual insert could differ from the latest version.
♦ GNP Gateway® entry clone was constructed from the open reading frame (ORF) amplified by PCR.
(1) ID and associated information of the cDNA clone used as a template of PCR.

NRCD Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector CDS comparison Status
Refered mRNA(1) CDS status
5'-terminal sequence(2)
HKR120882 ARh02D10 pGCAP1 NM_006253.4  
GGCTGAGGGGTGGTGAAGCGGTTGGGAAAGTGTCGGNNNNNTNNNAANNNCCCCTTGCGT

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
♦ These clones have very long transcript since they were constructed by the method "Vector Capping."
(1) Refference sequence either NCBI mRNA or DDBJ DNA identified by the 5' terminal sequence.
(2) 5' terminal sequence of the insert provided from the depositor.

NRCDhumcloneList_AR_2024May11.csv
NRCDhumcloneList_RB_2024May11.csv

2024.09.25

Homo_sapiens_gene_info230514.csv - RDB_hum_GIxxxxxxxxx_html_240727.pl