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RIKEN DNA Bank Human Resource - POU5F1

Gene ID NCBI Gene 5460 |  KEGG hsa:5460
Gene Symbol POU5F1
Protein Name POU class 5 homeobox 1
Synonyms OCT3|OCT4|OTF-3|OTF3|OTF4|Oct-3|Oct-4|Oct3/4
Featured content Signaling pathways regulating pluripotency of stem cells (human)

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Ortholog resource in our bank

  POU5F1

External database

human POU5F1

Individualy Deposited Resource

Catalog number Name of Resource Description CDS comparison
Refered (NCBI mRNA) CDS status(1)
RDB06424 pGEM3Zf_hsOct3/4isoform2 Plasmid clone of human Oct3/4 isoform 2 cDNA (NM_203289).    
RDB06429 pGEM3Zf_hsOct3/4isoform1(F) Plasmid clone of human Oct3/4 isoform 1 cDNA.    
RDB06434 pENTR/hOct3/4 Plasmid vector of human POU5F1    
RDB06598 pCMFlag_hsOct3/4 isoform1 Expression vector of human Oct3/4 isofom 1.    
RDB06603 pGEM3Zf_hsOct3/4isoform1(R) Plasmid clone of human Oct3/4 isoform 1 cDNA.    
RDB06669 pCMFlag_hsOct3/4 isoform2 Expression vector of human Oct3/4 isoform 2 (NM_203289).    
RDB06687 pGEM3Zf_hsOct3/4isoform2(F) Plasmid vector of human OCT3/4 cDNA isoform 2    
RDB06690 pGEM3Zf_hsOct3/4isoform2(R) Plasmid vector of human OCT3/4 cDNA isoform 2    
RDB06788 pCMFlag_hsOct3/4 isoform2 Expression vector of human Oct3/4 isoform 2 (NM_203289).    
RDB07052 pAxEFFlag_hsOct3/4isofom1it2 Shuttle vector to generate rAd harboring human POU5F1    
RDB07053 pAxEFFlag_hsOct3/4isofom2it2 Shuttle vector to generate rAd harboring human POU5F1    
RDB07358 pAxEFFlag_hsOct3/4isofom2it2 Shuttle vector to generate rAd harboring human POU5F1, isoform2    
RDB07361 pdxEFFlag_hsOct3/4isofom2it2 Plasmid clone of human POU5F1 cDNA    
RDB07912 pGL4-phPOU5F1 Promoter collection, Human POU5F1 promoter    
RDB08323 CSIV-CMV-hOct3/4-IRES2-Venus Lentivirus vector plasmid of human OCT3/4 for generating iPS cells.    
RDB12896 CSII-CMV-hOct3/4-IRES2-Venus    
RDB12908 CSII-EF-hOct3/4-IRES2-Venus Lentivirus vector plasmid of human OCT3/4 for generating iPS cells.    
RDB12913 CS-UbC-hOct3/4-IRES2-Venus Lentivirus vector plasmid of human OCT3/4 for generating iPS cells.    
RDB12914 CS-UbC-hOct3/4-IRES2-hKO1    
RDB12920 CSIV-TRE-hOct3/4-CMV-KT Lentivirus vector plasmid of human OCT3/4 driven by Tet-responsive promoter and hKO1-2A-rtTA driven by CMV promoter.    
RDB19572 pUCtk2x2-OCT3/4-TEZ Donor vector for the tdTomato reporter knock-in at the ORF end of OCT3/4. Selection of knocked-in clone using the double-tk system is available.    
RDB19586 pUC-OCT3/4-TEZ Donor vector for the tdTomato reporter knock-in at the ORF end of OCT3/4.    

(1) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.

webcatalog20240727.tab

Genome Network Project (GNP) Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number Clone name Vector Sequence submitted (DDBJ)(1) CDS comparison
Refered (NCBI mRNA) CDS status(2)
HGY094898 IRAL037E02 pDNR-LIB BC020712 NM_203289 Full

(1) Actual nucleotide sequence of this clone submitted to the DNA Data Bank of Japan (DDBJ)/EMBL/Genbank.
(2) CDS status was determined by comparing the plasmid sequence with NCBI RefSeq mRNA.
♦ Full, whole CDS.
♦ Full/var, whole CDS though with ins/dels or substitution.
♦ Partial, partial CDS
♦ Partial/var, partial CDS though with ins/dels or substitution.

GNP_full_IRAK_2024May11.csv
GNP_full_IRAL_2024May11.csv

Genome Network Project (GNP) Gateway® Entry Clone

Plasmid request [in Japanese] [in English]

W series

Catalog number Clone name Vector Constructed from(1) CDS comparison Status
Clone ID Sequence (DDBJ) Refered mRNA CDS status
HGE038434 W01A096B10 pENTR-TOPO IRAL037E02 BC020712 NM_203289  
HGE038440 W01A096B16 pENTR-TOPO IRAL037E02 BC020712 NM_203289  
HGE047870 W01A119L06 pENTR-TOPO IRAL037E02 BC020712 NM_203289  
HGE047872 W01A119L08 pENTR-TOPO IRAL037E02 BC020712 NM_203289  
HGE047876 W01A119L12 pENTR-TOPO IRAL037E02 BC020712 NM_203289  

♦ W series clone contains a stop codon.

GNP_entry_W01A_2024May11.csv

♦ Full length sequence is not available. ORF information might be updated by now and thus actual insert could differ from the latest version.
♦ GNP Gateway® entry clone was constructed from the open reading frame (ORF) amplified by PCR.
(1) ID and associated information of the cDNA clone used as a template of PCR.

2024.09.12

Homo_sapiens_gene_info230514.csv - RDB_hum_GIxxxxxxxxx_html_240727.pl