RIKEN DNA Bank Human Resource

RIKEN DNA Bank Human Resource - HMGA1

Gene ID	NCBI Gene 3159 \| KEGG hsa:3159
Gene Symbol	HMGA1
Protein Name	high mobility group AT-hook 1
Synonyms	HMG-R\|HMGA1A\|HMGIY

Ortholog resource in our bank

  HMGA1

External database

  KEGG gene

  KEGG Ortholog

  NCBI Gene

Individualy Deposited Resource

Catalog number	Name of Resource	Description
RDB04700	pAxCALNLhHMGIY(forward)	Shuttle vector to generate rAd expressing human HMGA1
RDB04733	pAxCALNLhHMGIY(reverse)	Shuttle vector to generate rAd expressing human HMGA1
RDB05012	pAxCALNLhHMGIY(forward)	Shuttle vector to generate rAd expressing human HMGA1
RDB05013	pAxCALNLhHMGIY(reverse)	Shuttle vector to generate rAd expressing human HMGA1
RDB05142	pAxCALNLhHMGIY (forward)	Shuttle vector to generate rAd harboring human HMGIY (forward)

webcatalog20220516.tab

Genome Network Project (GNP) Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number	Clone name	Vector	Sequence submitted (DDBJ)⁽¹⁾	CDS comparison
Catalog number	Clone name	Vector	Sequence submitted (DDBJ)⁽¹⁾	Refered (NCBI mRNA)	CDS status⁽²⁾
HGY084494	IRAL011D22	pOTB7	BC004924	NM_145905	Full
HGY087170	IRAL017P10	pOTB7	BC008832	NM_145904	Full
HGY093837	IRAL034J21	pOTB7	BC015789	NM_145905	Full
HGY100057	IRAL050C09	pOTB7	BC067083	NM_145904	Full
HGY103284	IRAL058D12	pOTB7	BC071863	NM_145905	Partial
HGY103400	IRAL058I08	pOTB7	BC071864	NM_145904	Full

(1) Actual nucleotide sequence of this clone submitted to the DNA Data Bank of Japan (DDBJ)/EMBL/Genbank.
(2) CDS status was determined by comparing the clone sequence with NCBI RefSeq mRNA.
♦ Full, whole CDS.
♦ Full/var, whole CDS though with ins/dels or substitution.
♦ Partial, partial CDS
♦ Partial/var, partial CDS though with ins/dels or substitution.

GNP_full_IRAK_2023Apr24.csv
GNP_full_IRAL_2023Apr24.csv

NRCD Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number	Clone name	Vector	CDS comparison
	Clone name	Vector	Refered mRNA⁽¹⁾	CDS status
	5'-terminal sequence⁽²⁾
HKR046052	ARe15C04	pKA1U5	NM_002131.3
HKR046052	GCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGGC
HKR049772	ARe24H04	pKA1U5	NM_002131.3
HKR049772	GGCCCCTGGGTCGCTCTTTTTAAGCTCCCCTGCCNTNAAGNGTGCGCTCCTCTAANTGGG
HKR060826	ARe52B02	pKA1U5	NM_002131.3
HKR060826	ATCCTGGCCTCTAATTGGGACTCCGAGCCGGGCCTATTTCTGGCGCTGGCGCGNCTCCAA
HKR162502	ARi06E06	pGCAP10	NM_002131.3
HKR162502	CGGCCGGCCGATGCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGG
HKR166453	ARi16C05	pGCAP10	NM_002131.3
HKR166453	GCTTTTTAAGCTCCCCTGAGCCGGTGCTGCGCTCCTCTAATTGGGACTCCGAGCCGGGGC
HKR172857	ARi32C09	pGCAP10	NM_002131.3
HKR172857	GCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGGC
HKR175729	ARi39F09	pGCAP10	NM_002131.3
HKR175729	GCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGGC
HKR183682	ARi59D10	pGCAP10	NM_002131.3
HKR183682	GCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCNAGANGCAT
HKR186974	ARi67H06	pGCAP10	NM_002131.3
HKR186974	GCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGGC
HKR203253	ARiS008C05	pGCAP10	NM_002131.3
HKR203253	CGGCCGGCCGATGCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGG
HKR218122	ARiS045F02	pGCAP10	NM_002131.3
HKR218122	GCCTCTANTTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGGC
HKR219974	ARiS049P14	pGCAP10	NM_002131.3
HKR219974	ATGNNCNNCGCGGCGGCGGCGGTCTCTGAGCGCCTCTGCTCTCTCTCCCGGTTTCAGATC
HKR243879	ARiS109L15	pGCAP10	NM_002131.3
HKR243879	GCTTTTTAAGCTCCCCTGAGCCGGTGCTGCGCTCCTCTAATTGGGACTCCGAGCCGGGGC
HKR260003	ARiS150A03	pGCAP10	NM_002131.3
HKR260003	GCTTTTTTAANCTCCCCTGAGCCGGTGCTGCGCTCCTCTAATTGGGACTCCGAGCCGGGG
HKR260181	ARiS150H13	pGCAP10	NM_002131.3
HKR260181	GGAGCACGCGGCGGCGGCGGTCTCTGAGCGCCTCTGCTCTCTCTCCCGGTTTCAGATCCG
HKR276634	ARiS191J18	pGCAP10	NM_002131.3
HKR276634	GCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGGC
HKR320853	RBb02C05	pKA1U5	NM_002131.3
HKR320853	GCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGCA
HKR323259	RBb08C11	pKA1U5	NM_002131.3
HKR323259	GCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGGC
HKR327754	RBb19G10	pKA1U5	NM_002131.3
HKR327754	GGAGTTGTGCACCCGGCGGAGCCCGGAGGAGCCCGTTTNCACCTCGCGCGGCGGCCGCTC
HKR328526	RBb21F06	pKA1U5	NM_002131.3
HKR328526	GTCCTCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGA
HKR329379	RBb23H11	pGCAP1	NM_002131.3
HKR329379	TCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGGC
HKR330949	RBb27G05	pGCAP1	NM_002131.3
HKR330949	TGCTCCTCTAATTGGGACTCCGTAGCCGGGGCTATTTCTGGCGNTGGNGCGGCTCCAAGA
HKR344078	RBb60D06	pGCAP1	NM_002131.3
HKR344078	GCTCTCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGA
HKR346029	RBb65B05	pGCAP1	NM_002131.3
HKR346029	GCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGGC
HKR346859	RBb67C11	pGCAP1	NM_002131.3
HKR346859	TTGCCTCTCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCA
HKR363308	RBd08E12	pGCAP10	NM_002131.3
HKR363308	GCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGGC
HKR374429	RBd36B05	pGCAP10	NM_002131.3
HKR374429	GTCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGG
HKR374573	RBd36H05	pGCAP10	NM_002131.3
HKR374573	GACGCGGCGGCGGCGGTCTCTGAGCGCCTCTGCTCTCTCTCCCGGTTTCAGATCCGCATT
HKR384926	RBd62F06	pGCAP10	NM_002131.3
HKR384926	GATTCTGGCGCTGGCGCGGCTCCAAGAAGGCATCCGCATTTGCTACCAGCGGCGGCCGCG
HKR388036	RBd70B12	pGCAP10	NM_002131.3
HKR388036	GAGAAGGCGTGAGTTCGCGGCCGCTCCGGTGGCTTCTTTTTTTTATATCTATAATTTAAT
HKR395699	RBd89E03	pGCAP10	NM_002131.3
HKR395699	GCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGGCA
HKR398554	RBd96G10	pGCAP10	NM_002131.3
HKR398554	GGGACGGAAGCCGACCGGGGCGTGCGGAGGGATGTGGCCCGGAATATTGGTAGGGGGGGC
HKR399775	RBd99H07	pGCAP10	NM_002131.3
HKR399775	TGCCTCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGA
HKR405301	RBdS013E05	pGCAP10	NM_002131.3
HKR405301	GGCGGGCGGGCCCGTCCCCCCTGCCCCTGGGTCGCTCTTTTTAAGCTCCCCTGAGCCGGT
HKR405526	RBdS013N14	pGCAP10	NM_002131.3
HKR405526	GGGGGGCCTGGGCGGCNAGCACGCGGCGGCGGCGGTCTCTGAGCGCCTCTGCTCTCTCTC
HKR405694	RBdS014D22	pGCAP10	NM_002131.3
HKR405694	GCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGGC
HKR416260	RBdS040K20	pGCAP10	NM_002131.3
HKR416260	GATTTTCTGGCGCTGGCGCGGCTCCAAGAAGGCATCCGCATTTGCTACCAGCGGCGGCCG
HKR420579	RBdS051H11	pGCAP10	NM_002131.3
HKR420579	GCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGGC
HKR442224	RBdS105J08	pGCAP10	NM_002131.3
HKR442224	GGCTCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAA

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
♦ These clones have very long transcript since they were constructed by the method "Vector Capping."
(1) Refference sequence either NCBI mRNA or DDBJ DNA identified by the 5' terminal sequence.
(2) 5' terminal sequence of the insert provided from the depositor.

NRCDhumcloneList_AR_2023May03.csv
NRCDhumcloneList_RB_2023May03.csv

2023.05.10

Homo_sapiens_gene_info200108.csv - RDB_hum_GIxxxxxxxxx_html_230504.pl