RIKEN DNA Bank Human Resource

RIKEN DNA Bank Human Resource - H3-3A

Gene ID	NCBI Gene 3020 \| KEGG hsa:3020
Gene Symbol	H3-3A
Protein Name	H3.3 histone A
Synonyms	H3-3B\|H3.3A\|H3F3\|H3F3A

Ortholog resource in our bank

  H3-3A

External database

  KEGG gene

  KEGG Ortholog

  NCBI Gene

Genome Network Project (GNP) Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number	Clone name	Vector	Sequence submitted (DDBJ)⁽¹⁾	CDS comparison
Catalog number	Clone name	Vector	Sequence submitted (DDBJ)⁽¹⁾	Refered (NCBI mRNA)	CDS status⁽²⁾
HGX033104	IRAK082M16	pCMV-SPORT6	BC038989	NM_002107	Full
HGX066424	IRAK166A24	pCMV-SPORT6	BC081560	NM_002107	Full
HGX066548	IRAK166G04	pCMV-SPORT6	BC081561	NM_002107	Full/var
HGY066964	IRAK167G20	pBluescriptR	BC066901	NM_002107	Full
HGY067254	IRAK168C06	pBluescriptR	BC067757	NM_002107	Full
HGY096446	IRAL041B22	pDNR-LIB	BC029405	NM_002107	Full

(1) Actual nucleotide sequence of this clone submitted to the DNA Data Bank of Japan (DDBJ)/EMBL/Genbank.
(2) CDS status was determined by comparing the clone sequence with NCBI RefSeq mRNA.
♦ Full, whole CDS.
♦ Full/var, whole CDS though with ins/dels or substitution.
♦ Partial, partial CDS
♦ Partial/var, partial CDS though with ins/dels or substitution.

GNP_full_IRAK_2023Apr24.csv
GNP_full_IRAL_2023Apr24.csv

Genome Network Project (GNP) Gateway® Entry Clone

Plasmid request [in Japanese] [in English]

M series

Catalog number	Clone name	Vector	Constructed from⁽¹⁾		CDS comparison		Status
Catalog number	Clone name	Vector	Clone ID	Sequence (DDBJ)	Refered mRNA	CDS status	Status
HGE081223	M01C003A23	pDONR221	04-134-2_2-A12	BC029405	NM_002107
HGE081271	M01C003C23	pDONR221	04-134-2_2-A12	BC029405	NM_002107
HGE081319	M01C003E23	pDONR221	04-134-2_2-A12	BC029405	NM_002107
HGE081367	M01C003G23	pDONR221	04-134-2_2-A12	BC029405	NM_002107
HGE081415	M01C003I23	pDONR221	04-134-2_2-A12	BC029405	NM_002107
HGE081463	M01C003K23	pDONR221	04-134-2_2-A12	BC029405	NM_002107
HGE081511	M01C003M23	pDONR221	04-134-2_2-A12	BC029405	NM_002107
HGE081559	M01C003O23	pDONR221	04-134-2_2-A12	BC029405	NM_002107
HGE113648	M01C084B24	pDONR221	IMS05-H12	BC029405	NM_002107
HGE113696	M01C084D24	pDONR221	IMS05-H12	BC029405	NM_002107
HGE113744	M01C084F24	pDONR221	IMS05-H12	BC029405	NM_002107
HGE113792	M01C084H24	pDONR221	IMS05-H12	BC029405	NM_002107
HGE113840	M01C084J24	pDONR221	IMS05-H12	BC029405	NM_002107
HGE113888	M01C084L24	pDONR221	IMS05-H12	BC029405	NM_002107
HGE113936	M01C084N24	pDONR221	IMS05-H12	BC029405	NM_002107
HGE113984	M01C084P24	pDONR221	IMS05-H12	BC029405	NM_002107

♦ M series clone does not contain stop codon.

GNP_entry_M01C_2023Apr24.csv

W series

Catalog number	Clone name	Vector	Constructed from⁽¹⁾		CDS comparison		Status
Catalog number	Clone name	Vector	Clone ID	Sequence (DDBJ)	Refered mRNA	CDS status	Status
HGE004197	W01A010I05	pENTR-TOPO	IRAL041B22	BC029405	NM_002107
HGE045217	W01A113A17	pENTR-TOPO	IRAK167G20	BC066901	NM_002107
HGE045219	W01A113A19	pENTR-TOPO	IRAK167G20	BC066901	NM_002107

♦ W series clone contains a stop codon.

GNP_entry_W01A_2023Apr24.csv

♦ Full length sequence is not available. ORF information might be updated by now and thus actual insert could differ from the latest version.
♦ GNP Gateway® entry clone was constructed from the open reading frame (ORF) amplified by PCR.
(1) ID and associated information of the cDNA clone used as a template of PCR.

NRCD Human cDNA Clone

Plasmid request [in Japanese] [in English]

Catalog number	Clone name	Vector	CDS comparison
	Clone name	Vector	Refered mRNA⁽¹⁾	CDS status
	5'-terminal sequence⁽²⁾
HKR045606	ARe14A06	pKA1U5	NM_002107.3
HKR045606	GGCTCGCCGAGCTCCAGCCGAAGGAGAAGGGGGGTAAGTAAGGAGGTCTCTGTACCATGG
HKR068034	ARe70B10	pKA1U5	NM_002107.3
HKR068034	GGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTCGCCGAGCTCCAGCCG
HKR160476	ARi01D04	pGCAP10	NM_002107.3
HKR160476	AATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCG
HKR180922	ARi52F02	pGCAP10	NM_002107.3
HKR180922	GGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTCGCCGAGCTCCAGCCGAAGGAGAA
HKR184405	ARi61A05	pGCAP10	NM_002107.3
HKR184405	GCAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCT
HKR186506	ARi66E10	pGCAP10	NM_002107.3
HKR186506	GTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTCG
HKR264626	ARiS161J10	pGCAP10	NM_002107.3
HKR264626	GAATTGNGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTC
HKR279247	ARiS198B23	pGCAP10	NM_002107.3
HKR279247
HKR322054	RBb05C06	pKA1U5	NM_002107.3
HKR322054	GGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTCGCCGAGCTCCAGCCGAAGGAGAA
HKR322128	RBb05F08	pKA1U5	NM_002107.3
HKR322128	GGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTTNGCCGAGCTCCAGCCGAAGGAGA
HKR324477	RBb11D05	pKA1U5	NM_002107.3
HKR324477	GTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTCG
HKR330100	RBb25E04	pGCAP1	NM_002107.3
HKR330100	GAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTCGCCGAGCT
HKR332850	RBb32C02	pGCAP1	NM_002107.3
HKR332850	GTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTCG
HKR338484	RBb46D12	pGCAP1	NM_002107.3
HKR338484
HKR345607	RBb64A07	pGCAP1	NM_002107.3
HKR345607	AATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCG
HKR348054	RBb70C06	pGCAP1	NM_002107.3
HKR348054	TTAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCT
HKR348174	RBb70H06	pGCAP1	NM_002107.3
HKR348174	AATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCG
HKR365236	RBd13B12	pGCAP10	NM_002107.3
HKR365236	GAATTGNGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTC
HKR368459	RBd21C11	pGCAP10	NM_002107.3
HKR368459	GAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTC
HKR370148	RBd25G04	pGCAP10	NM_002107.3
HKR370148	GGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTC
HKR375355	RBd38G11	pGCAP10	NM_002107.3
HKR375355	GGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTC
HKR377230	RBd43B06	pGCAP10	NM_002107.3
HKR377230	GGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTC
HKR387305	RBd68E09	pGCAP10	NM_002107.3
HKR387305	GTGTTCNCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTCG
HKR390170	RBd75H02	pGCAP10	NM_002107.3
HKR390170	GGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTC
HKR390929	RBd77F09	pGCAP10	NM_002107.3
HKR390929	GAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTC
HKR395611	RBd89A11	pGCAP10	NM_002107.3
HKR395611	GGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTC
HKR403004	RBdS007I12	pGCAP10	NM_002107.3
HKR403004	GGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTC
HKR405377	RBdS013H09	pGCAP10	NM_002107.3
HKR405377	GAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTC
HKR405426	RBdS013J10	pGCAP10	NM_002107.3
HKR405426	TGAGCCGCCGCCGCGCCNCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTCGCCGAGC
HKR406103	RBdS015E07	pGCAP10	NM_002107.3
HKR406103	GAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTC
HKR406216	RBdS015I24	pGCAP10	NM_002107.3
HKR406216	GATCTTTCAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCC
HKR409020	RBdS022J04	pGCAP10	NM_002107.3
HKR409020	GGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTC
HKR430313	RBdS075N01	pGCAP10	NM_002107.3
HKR430313	GAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTC
HKR432517	RBdS081E21	pGCAP10	NM_002107.3
HKR432517	GCAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCT
HKR432657	RBdS081K17	pGCAP10	NM_002107.3
HKR432657	GNGGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGC
HKR433348	RBdS083G04	pGCAP10	NM_002107.3
HKR433348	GAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTC
HKR441607	RBdS104A07	pGCAP10	NM_002107.3
HKR441607	GCTCTCGCTCGCCGAGCTCCAGCCGAAGGAGAAGGGGGGTAAGTAAGGAGGTCTCTGTAC
HKR441668	RBdS104C20	pGCAP10	NM_002107.3
HKR441668	GGGCGTGTGTTGGGGGATAGCCTCGGTGTCAGCCATCTTTCAATTGTGTTCGCAGCCGCC
HKR442047	RBdS105B23	pGCAP10	NM_002107.3
HKR442047	GAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTC
HKR442172	RBdS105H04	pGCAP10	NM_002107.3
HKR442172	GAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTC
HKR442177	RBdS105H09	pGCAP10	NM_002107.3
HKR442177	GTCGCTCGCCGAGCTCCAGCCGAAGGAGAAGGGGGGTAAGTAAGGAGGTCTCTGTACCAT
HKR462491	RBdS156D19	pGCAP10	NM_002107.3
HKR462491	GGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTCGCCGAGCTCCAGCCGAAGGAGAA
HKR470897	RBdS177E01	pGCAP10	NM_002107.3
HKR470897	GGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTCGCTCGCCGAGCTCCAGCCGAAGGA
HKR474995	RBdS187I03	pGCAP10	NM_002107.3
HKR474995	GGCGTGTGTTGGGGGATAGCCTCGGTGTCAGCCATCTTTCAATTGTGTTCGCAGCCGCCG

♦ Full length sequence is not available. The clone could differ from the NCBI mRNA reference sequence.
♦ These clones have very long transcript since they were constructed by the method "Vector Capping."
(1) Refference sequence either NCBI mRNA or DDBJ DNA identified by the 5' terminal sequence.
(2) 5' terminal sequence of the insert provided from the depositor.

NRCDhumcloneList_AR_2023May03.csv
NRCDhumcloneList_RB_2023May03.csv

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2023.05.07

Homo_sapiens_gene_info200108.csv - RDB_hum_GIxxxxxxxxx_html_230504.pl