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px330-PPP

Expression vector of human codon-optimized SpCas9 and gRNA, puromycin resistance.

Catalog number RDB18386
Resource name px330-PPP
Alternative name px330-PGK-puro-pA
Clone info. Expression vector of human codon-optimized SpCas9 and gRNA, puromycin resistance.
Vector backbone pX330-U6-Chimeric_BB-CBh-hSpCas9 (plasmid)
Size of vector backbone 8.5 kb
Selectable markers Ampicillin
Gene/insert name mouse PGK genomic DNA
Depositor|Developer Yamada, Yasuhiro |
Other clones in our bank

External Database
mouse PGK

            Reference sequence
              
             
            Sequence (full) RDB18386zzk02.seq provided by the depositor

            Distribution information

            Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
            Terms and conditions for distribution In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature designated by the DEPOSITOR is requested. (Sakakura, M. et. Al., Biochem. Biophys. Res. Commun. 519(4): 705-713, 2019)
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            Remarks
            The BIOLOGICAL RESOURCE contains CRISPR/Cas9 technologies and is not provided to for-profit organization or for for-profit research by non-profit organizations.
            提供案内 (日本国内) [open/close]

            提供条件 利用者は、研究成果の公表にあたって寄託者の指定する文献を引用する (Sakakura, M. et. Al., Biochem. Biophys. Res. Commun. 519(4): 705-713, 2019)。
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            提供依頼書 [Word]
            専用MTA(CRISPR/Cas9内包遺伝子材料専用 非営利学術目的)をお使いください [Word]
            手続きの概要は、「提供申込みについて[link]」をご覧ください。
            備考
            本件リソースはCRISPR/Cas9 technologyを用いたゲノム編集バイオリソースです。営利機関および非営利機関による営利目的研究には提供いたしません。

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            RDB18386 px330-PPP DNA solution

            Please review the QC test results indicated by check icon below as well as clone information before placing your order.

            How to cite this biological resource

            Materials & Methods section:

            The px330-PPP was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan (cat. RDB18386).

            Reference section:

            Sakakura, M., Ohta, S., Yagi, M., Tanaka, A., Norihide, J., Woltjen, K., Yamamoto, T., Yamada, Y. , Smarcb1 maintains the cellular identity and the chromatin landscapes of mouse embryonic stem cells. Biochem. Biophys. Res. Commun. 519 (4): 705-713 (2019). PMID 31543342. [link to RRC of NBRP]

            Further references such as user reports and related articles (go to bottom)


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            Featured content Genome Editing (English text)
            Featured content Genome Editing (Japanese text)

            QC test results

            RIKEN BRC has sequenced portions of this material for quality test.
            Please review the QC test results indicated by check icon as well as clone information before placing your order.

            Test sheet RDB18386_B0Hop1-1.pdf check

            Nucleotide sequence of a portion of this resource (if available).

            Primer: PuroR-rev (Pr0423)
            Region: insert 5', bGH pA
            Sequence file: RDB18386_B0Hoa.seq check
            >D07192A1_B0Ho_2_PuroR-rev_B03_06_ABI24.ab1
                1 NNNNNNNNNN NNNNNNNGNA NNATACTATG CCGATATACT ATGCCGATGA TTAATTGTCA
               61 ACAGGCTGCA GGTCGAAAGG CCCGGAGATG AGGAAGAGGA GAACAGCGCG GCAGACGTGC
              121 GCTTTTGAAG CGTGCAGAAT GCCGGGCCTC CGGAGGACCT TCGGGCGCCC GCCCCGCCCC
              181 TGAGCCCGCC CCTGAGCCCG CCCCCGGACC CACCCCTTCC CAGCCTCTGA GCCCAGAAAG
              241 CGAAGGAGCA AAGCTGCTAT TGGCCGCTGC CCCAAAGGCC TACCCGCTTC CATTGCTCAG
              301 CGGTGCTGTC CATCTGCACG AGACTAGTGA GACGTGCTAC TTCCATTTGT CACGTCCTGC
              361 ACGACGCGAG CTGCGGGGCG GGGGGGAACT TCCTGACTAG GGGAGGAGTA GAAGGTGGCG
              421 CGAAGGGGCC ACCAAAGAAC GGAGCCGGTT GGCGCCTACC GGTGGATGTG GAATGTGTGC
              481 GAGGCCAGAG GCCACTTGTG TAGCGCCAAG TGCCCAGCGG GGCTGCTAAA GCGCATGCTC
              541 CAGACTGCCT TGGGAAAAGC GCCTCCCCTA CCCGGTAGAG CGGCCGCTCC CCAGCATGCC
              601 TGCTATTCTC TTCCCAATCC TCCCCCTTGC TGTCCTGCCC CACCCCACCC CCCAGAATAG
              661 AATGACACCT ACTCAGACAA TGCGATGCAA TTTCCTCATT TTATTAGGAA AGGACAGTGG
              721 GAGTGGCACC TTCCAGGGTC AAGGAAGGCA CGGGGGANGG GCAAACAACA GATGGCTGGC
              781 AACTAGAANG CACAGTCGAG GCTGATCAGC GAGCTCTANG AATTCTTACT TTTTCTTTTT
              841 TGCCTGGCCG GNCTTTTTCG TGGCCGCCGG CCTTTTGTCG CCTCCNNNCT GANACAGGTC
              901 GATCNGTGTC TCGTACAGGN CGGNGNNGCT CTNGNNNNTC ANGGTGGCGT CCAGCANCTC
              961 TTTGGNGCTG GNGTACNNCT TCCNNNCGAN GGNNGNGNCA AANNANTTGN ANNNNNNNNG
            1021 GGNNNCCNNN NNNNNNN
            //
            Primer: PGKpro_F (Pr0249)
            Region: insert 3'
            Sequence file: RDB18386_B0Hob.seq check
            >D07192A1_B0Ho_2_PGKpro_F_C03_09_ABI24.ab1
                1 NNNNNNNNNN NNNNNNNTNN NNNTCTCNGG GCCTTTCGAC CTGCAGCCTG TTGACNATTA
               61 ATCATCGGCA TAGTATATCG GCATAGTATA ATACGACAAG GTGAGGAACT AAACCATGAC
              121 CGAGTACAAG CCCACGGTGC GCCTCGCCAC CCGCGACGAC GTCCCCAGGG CCGTACGCAC
              181 CCTCGCCGCC GCGTTCGCCG ACTACCCCGC CACGCGCCAC ACCGTCGATC CGGACCGCCA
              241 CATCGAGCGG GTCACCGAGC TGCAAGAACT CTTCCTCACG CGCGTCGGGC TCGACATCGG
              301 CAAGGTGTGG GTCGCGGACG ACGGCGCCGC GGTGGCGGTC TGGACCACGC CGGAGAGCGT
              361 CGAAGCGGGG GCGGTGTTCG CCGAGATCGG CCCGCGCATG GCCGAGTTGA GCGGTTCCCG
              421 GCTGGCCGCG CAGCAACAGA TGGAAGGCCT CCTGGCGCCG CACCGGCCCA AGGAGCCCGC
              481 GTGGTTCCTG GCCACCGTCG GCGTCTCGCC CGACCACCAG GGCAAGGGTC TGGGCAGCGC
              541 CGTCGTGCTC CCCGGAGTGG AGGCGGCCGA GCGCGCCGGG GTGCCCGCCT TCCTGGAGAC
              601 CTCCGCGCCC CGCAACCTCC CCTTCTACGA GCGGCTCGGC TTCACCGTCA CCGCCGACGT
              661 CGAGGTGCCC GAAGGACCGC GCACCTGGTG CATGACCCGC AAGCCCGGTG CCTGATGACA
              721 CTCGACCTCG AAACTTGTTT ATTGCAGCTT ATAATGGTTA CAAATAAAGC AATAGCATCA
              781 CAAATTTCAC AAATAAAGCA TTTTTTTCAC TGCATTCTAG TTGTGGTTTG TCCAAACTCA
              841 TCAATGTATC TTATCATGTC TGCCTGANGC GGTATTTTCT CCTTACGCAT CTGTGCGGNA
              901 TTTCACACCG CANACGTCNA AGCAANNATA GTANGCGCCC NGTANCGGCG CANTAANCGC
              961 GGCGGGNGTG GNGGTTACGC GCANCGNGNC CGNNACNNNN GCCAGCGCCN TANCGNCNNN
            1021 NNCNTTTNGN NTTNNNNCNN TNNNNTNNNN NNNNNN
            //
            Primer: U6pro_F3 (Pr0648)
            Region: hU6 pro, gRNA scafforld, CBh pro
            Sequence file: RDB18386_B0Hoc.seq check
            >D07192A1_B0Ho_2_U6pro_F3_D03_12_ABI24.ab1
                1 NNNNNNNNNN NNNNANNGGN NNATNNTATG CTTACCGTAA CTTGAAAGTA TTTCGATTTC
               61 TTGGCTTTAT ATATCTTGTG GAAAGGACGA AACACCGGGT CTTCGAGAAG ACCTGTTTTA
              121 GAGCTAGAAA TAGCAAGTTA AAATAAGGCT AGTCCGTTAT CAACTTGAAA AAGTGGCACC
              181 GAGTCGGTGC TTTTTTGTTT TAGAGCTAGA AATAGCAAGT TAAAATAAGG CTAGTCCGTT
              241 TTTAGCGCGT GCGCCAATTC TGCAGACAAA TGGCTCTAGA GGTACCCGTT ACATAACTTA
              301 CGGTAAATGG CCCGCCTGGC TGACCGCCCA ACGACCCCCG CCCATTGACG TCAATAGTAA
              361 CGCCAATAGG GACTTTCCAT TGACGTCAAT GGGTGGAGTA TTTACGGTAA ACTGCCCACT
              421 TGGCAGTACA TCAAGTGTAT CATATGCCAA GTACGCCCCC TATTGACGTC AATGACGGTA
              481 AATGGCCCGC CTGGCATTGT GCCCAGTACA TGACCTTATG GGACTTTCCT ACTTGGCAGT
              541 ACATCTACGT ATTAGTCATC GCTATTACCA TGGTCGAGGT GAGCCCCACG TTCTGCTTCA
              601 CTCTCCCCAT CTCCCCCCCC TCCCCACCCC CAATTTTGTA TTTATTTATT TTTTAATTAT
            661 TTTGTGCAGC GATGGGGGCG GGGGGGGGGG GGGGNNNNNN NNNN
            //
            Primer: CAG_R2 (Pr0585)
            Region: CBh pro, 3xFLAG, SV40 NSL, Cas9 5'
            Sequence file: RDB18386_B0Hod.seq check
            >D07192A1_B0Ho_2_CAG_R2_E03_15_ABI24.ab1
                1 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNCNNGCNN NGCNCCGCCG CCGCCTCGCG
               61 CCGCCCGCCC CGGCTCTGAC TGACCGCGTT ACTCCCACAG GTGAGCGGGC GGGACGGCCC
              121 TTCTCCTCCG GGCTGTAATT AGCTGAGCAA GAGGTAAGGG TTTAAGGGAT GGTTGGTTGG
              181 TGGGGTATTA ATGTTTAATT ACCTGGAGCA CCTGCCTGAA ATCACTTTTT TTCAGGTTGG
              241 ACCGGTGCCA CCATGGACTA TAAGGACCAC GACGGAGACT ACAAGGATCA TGATATTGAT
              301 TACAAAGACG ATGACGATAA GATGGCCCCA AAGAAGAAGC GGAAGGTCGG TATCCACGGA
              361 GTCCCAGCAG CCGACAAGAA GTACAGCATC GGCCTGGACA TCGGCACCAA CTCTGTGGGC
              421 TGGGCCGTGA TCACCGACGA GTACAAGGTG CCCAGCAAGA AATTCAAGGT GCTGGGCAAC
              481 ACCGACCGGC ACAGCATCAA GAAGAACCTG ATCGGAGCCC TGCTGTTCGA CAGCGGCGAA
              541 ACAGCCGAGG CCACCCGGCT GAAGAGAACC GCCAGAAGAA GATACACCAG ACGGAAGAAC
              601 CGGATCTGCT ATCTGCAAGA GATCTTCNGC AACGAGATGG CCAAGGTGGA CGACAGCTTC
              661 TTCCACAGAC TGGAAGAGTC CTTCCTGGTG GAAGAGGATA AGAAGCACGA GCGGCACCCC
              721 ATCTTCGGCA ACATCGTGGA CGANGTGGCC TANNNNNNGA AGTACCCCAC CATCTACCAC
              781 CTGANAAAGA NACTGGTGGA CAGCNCCGAN NANNGNCGAN CTGCGGCTGA TCTATCTGGN
              841 CCNGGCCCAC ATGATCAAGT TCCGGGGCNN CTTNCTGATC NAGGGCGANN TGANNCCCCG
            901 ACNANAGCGA CGTGNANNAG CTGNTNNNCN AGCNGGNNNA NANCNNNNAN NNNNNNNNN
            //
            Primer: bGH_rev3 (Pr0885)
            Region: bGH pA, Cas9 3'
            Sequence file: RDB18386_B0Hoe.seq check
            >D07192A1_B0Ho_2_bGH_rev3_F03_18_ABI24.ab1
                1 NNNNNNNNNN NGNNNGGNNG NNGGNNNNNN ACAGANGGCT GGCAACTAGA AGGCACAGTC
               61 GAGGCTGATC AGCGAGCTCT AGGAATTCTT ACTTTTTCTT TTTTGCCTGG CCGGCCTTTT
              121 TCGTGGCCGC CGGCCTTTTG TCGCCTCCCA GCTGAGACAG GTCGATCCGT GTCTCGTACA
              181 GGCCGGTGAT GCTCTGGTGG ATCAGGGTGG CGTCCAGCAC CTCTTTGGTG CTGGTGTACC
              241 TCTTCCGGTC GATGGTGGTG TCAAAGTACT TGAAGGCGGC AGGGGCTCCC AGATTGGTCA
              301 GGGTAAACAG GTGGATGATA TTCTCGGCCT GCTCTCTGAT GGGCTTATCC CGGTGCTTGT
              361 TGTAGGCGGA CAGCACTTTG TCCAGATTAG CGTCGGCCAG GATCACTCTC TTGGAGAACT
              421 CGCTGATCTG CTCGATGATC TCGTCCAGGT AGTGCTTGTG CTGTTCCACA AACAGCTGTT
              481 TCTGCTCATT ATCCTCGGGG GAGCCCTTCA GCTTCTCATA GTGGCTGGCC AGGTACAGGA
              541 AGTTCACATA TTTGGAGGGC AGGGCCAGTT CGTTTCCCTT CTGCAGTTCG CCGGCAGAGG
              601 CCAGCATTCT CTTCCGGCCG TTTTCCAGCT CGAACAGGGA GTACTTAGGC AGCTTGATGA
              661 TCAGGTCCTT TTTCACTTCT TTGTAGCCCT TGGCTTCCAG AAAGTCGATG GGATTCTTCT
              721 CGAAGCTGCT TCTTTCCATG ATGGTGNTCC CCAGCAGCTC TTTCACACTC TTCAGTTTCT
              781 TGGACTTGCC CTTTTCCACT TTGGCCACCA CCAGCACAGA ATANGCCACG GTGGGGCTGT
              841 CGAAGCCGCC GTACTTCTTA NGGTCCCAGT CCTTCTTTCT GGCGATCAGC TTATCGCTGT
              901 NNCTCTTGGG CAGGANAGAC TCTTTGCTGA AGCCGCCNGT CTGCACCNCG GNCTTTTTCN
              961 CGATATTCAC TTNNNNNNGN NCANNANNTN NCNGCANGGN GGNNAANNCN NGNNCNNTNN
            1021 NNCNNNNNNN NNN
            //

            Please visit Sequencing and PCR primers for primer information.


            References

            Original, user report and related articles

            original Sakakura, M., Smarcb1 maintains the cellular identity and the chromatin landscapes of mouse embryonic stem cells. Biochem. Biophys. Res. Commun. 519 (4): 705-713 (2019). PMID 31543342. [link to RRC of NBRP]

            2024.03.26

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