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pT2/shp53/shNf1/CMV-PDGFA-IRES-DsRed

The Sleeping Beauty (SB) transposon system clone. Expression vector of human PDGFA and shRNAs against mouse shNf1/shp53.

Catalog number RDB16063
Resource name pT2/shp53/shNf1/CMV-PDGFA-IRES-DsRed
Alternative name PNP vector
Clone info. The Sleeping Beauty (SB) transposon system clone. Expression vector of human platelet-derived growth factor subunit A (PDGFA) and shRNAs against mouse Nf1 and Trp53 (shNf1/shp53). DsRed is expressed as a marker. Please refer to Fig.1A of Sumiyoshi, K. et al. Cancer Sci., 109 (5): 1513-1523, 2018.
Comment Expression was confirmed by the depositor with immunohistochemistry. shRNA for Nf1 (5'-GGACACAATGAGATTAGAT-3') and Trp53 (5'-GTACATGTGTAATAGCTCC-3').
Vector backbone pT2/Onc2 (plasmid)
Size of vector backbone 5.1 kb
Selectable markers Amp^r
Gene/insert name Human PDGFA cDNA mouse Nf1 cDNA mouse Trp53 cDNA
Depositor|Developer Koso, Hideto |
Other clones in our bank

External Database
Human PDGFA mouse Nf1 mouse Trp53

      Reference sequence
        

      Distribution information

      Ordering This clone is provided directly from Dr. Hideto Koso of the Institute of Medical Science, Tokyo University.
      提供案内 (日本国内) [open/close]

      提供依頼 本クローンは、東京大学医科学研究所の高祖秀登先生から直接提供いたします。


      References and tips

      Electronic file

      Original reference

      original Sumiyoshi, K., Spontaneous development of intratumoral heterogeneity in a transposon-induced mouse model of glioma. Cancer Sci. 109 (5): 1513-1523 (2018). PMID 29575648.

      Further references such as user reports and related articles (go to bottom)

      Featured content


      Sequence information

      RIKEN BRC has sequenced portions of this material for quality test.
      Please review the QC test results indicated by check icon as well as clone information before placing your order.

      Test sheet RDB16063_A8Idp1.pdf check

      Nucleotide sequence of a portion of this resource (if available).

      Primer: CMV-Forward
      Sequence file: RDB16063_A8Ida.seq check
      >D05854A4-2_A8Id_CMV-Forward_B02_05_ABI24.ab1
          1 CTTTAAACTC CGGCCCCATT GACGCAATGG GCGGTAGGCG TGTACGGTGG GAGGTCTATA
         61 TAAGCAGAGC TGGTTTAGTG AACCGTCAGA TCCGCTAGCG CTACCGGACT CAGATCTCGA
        121 GCTCAAGCTT CGAATTCACT AGTGATTGCG ATGAGGACCT TGGCTTGCCT GCTGCTCCTC
        181 GGCTGCGGAT ACCTCGCCCA TGTTCTGGCC GAGGAAGCCG AGATCCCCCG CGAGGTGATC
        241 GAGAGGCTGG CCCGCAGTCA GATCCACAGC ATCCGGGACC TCCAGCGACT CCTGGAGATA
        301 GACTCCGTAG GGAGTGAGGA TTCTTTGGAC ACCAGCCTGA GAGCTCACGG GGTCCACGCC
        361 ACTAAGCATG TGCCCGAGAA GCGGCCCCTG CCCATTCGGA GGAAGAGAAG CATCGAGGAA
        421 GCTGTCCCCG CTGTCTGCAA GACCAGGACG GTCATTTACG AGATTCCTCG GAGTCAGGTC
        481 GACCCCACGT CCGCCAACTT CCTGATCTGG CCCCCGTGCG TGGAGGTGAA ACGCTGCACC
        541 GGCTGCTGCA ACACGAGCAG TGTCAAGTGC CAGCCCTCCC GCGTCCACCA CCGCAGCGTC
        601 AAGGTGGCCA AGGTGGAATA CGTCAGGAAG AAGCCAAAAT TAAAAGAAGT CCAGGTGAGG
        661 TTAGAGGAGC ATTTGGAGTG CGCCTGCGCG ACCACAAGCC TGAATCCGGA TTATCGGGAA
        721 GAGGACACGG GAAGGCCTAG GGAGTCAGGT AAAAAACGGA AAAGAAAAAG GTTAAAACCC
        781 ACCTAAAGCA GCCAACCAGA TAATCGAATT CTGCAGTCGA CGGTACCGCG GGGCCCGGGG
        841 ATCCGCCCCT CTCCCTCCCC CCCCCCCCTA ACGTTACTGG CCGAAGCCGC TTGGAAATAA
        901 GGCCGGTGTG CGTTTGTCTA TATGTTAATT TTCCACCATA TTGCCGTCTT TTGGCAAATG
        961 TTAAGGGCCC GGAAAACCTG GACCCTGTCT TCTTTGAACG AAGCATTTCC TAGGGGGATC
      1021 TTTCCCTCTC CGCTAAAGGA ATGCCAGGTC CTGATGAAAT GTCGTTGAAG GAAGGCA
      //
      Primer: IRES-M_R
      Sequence file: RDB16063_A8Idb.seq check
      >D05854A4-2_A8Id_IRES-M_R_C02_08_ABI24.ab1
          1 TTCTTCAGAG GACTGCTTCC TTCACGACAT TCAACAGACC TTGCATTCCT TTGGCGAGAG
         61 GGGAAAGACC CCTAGGAATG CTCGTCAAGA AGACAGGGCC AGGTTTCCGG GCCCTCACAT
        121 TGCCAAAAGA CGGCAATATG GTGGAAAATA ACATATAGAC AAACGCACAC CGGCCTTATT
        181 CCAAGCGGCT TCGGCCAGTA ACGTTAGGGG GGGGGGAGGG AGAGGGGCGG ATCCCGGGCC
        241 CGCGGTACCG TCGACTGCAG AATTCGATTA TCTGGTTGGC TGCTTTAGGT GGGTTTTAAC
        301 CTTTTTCTTT TCCGTTTTTT ACCTGACTCC CTAGGCCTTC CCGTGTCCTC TTCCCGATAA
        361 TCCGGATTCA GGCTTGTGGT CGCGCAGGCG CACTCCAAAT GCTCCTCTAA CCTCACCTGG
        421 ACTTCTTTTA ATTTTGGCTT CTTCCTGACG TATTCCACCT TGGCCACCTT GACGCTGCGG
        481 TGGTGGACGC GGGAGGGCTG GCACTTGACA CTGCTCGTGT TGCAGCAGCC GGTGCAGCGT
        541 TTCACCTCCA CGCACGGGGG CCAGATCAGG AAGTTGGCGG ACGTGGGGTC GACCTGACTC
        601 CGAGGAATCT CGTAAATGAC CGTCCTGGTC TTGCAGACAG CGGGGACAGC TTCCTCGATG
        661 CTTCTCTTCC TCCGAATGGG CAGGGGCCGC TTCTCGGGCA CATGCTTAGT GGCGTGGACC
        721 CCGTGAGCTC TCAGGCTGGT GTCCAAAGAA TCCTCACTCC CTACGGAGTC TATCTCCAGG
        781 AGTCGCTGGA GGTCCCGGAT GCTGTGGATC TGACTGCGGG CCAGCCTCTC GATCACCTCG
        841 CGGGGGGATC TCGGCTTCCT CGGCCAGAAC ATGGGCGAGG TATCCGCAGC CGAGGAGCAG
        901 CAGGCAAGCC AAGGTCCTCA TCGCAAATCA CTAGTGAATT CGAAGCTTGA GCTCGAGATC
        961 TGAGTCCGGG TAGCGCTAGC GGGATCTGAC GGTTTCACTA AACCAGCTCT GCTTATATAG
       1021 AACCTCCCAC CCGGTACACG GCCTAACCCG GCCAATTTTG GCCGTCCATG GGGCCGGAAG
      1081 TGACTACCGC ACCATTTTGG AAAGGTTTCG C
      //
      Primer: M13_-40
      Sequence file: RDB16063_A8Idc.seq check
      >D05854A4-2_A8Id_M13_-40_A02_02_ABI24.ab1
          1 CGGCCAGTGA CGGCGCGTTA ATACGACTCA CTATAGGGCG AATTGGGAGC TCGGATCCCT
         61 ATACAGTTGA AGTCGGAAGT TTACATACAC TTAAGTTGGA GTCATTAAAA CTCGTTTTTC
        121 AACTACTCCA CAAATTTCTT GTTAACAAAC AATAGTTTTG GCAAGTCAGT TAGGACATCT
        181 ACTTTGTGCA TGACACAAGT CATTTTTCCA ACAATTGTTT ACAGACAGAT TATTTCACTT
        241 ATAATTCACT GTATCACAAT TCCAGTGGGT CAGAAGTTTA CATACACTAA GTTGACTGTG
        301 CCTTTAAACA GCTTGGAAAA TTCCAGAAAA TGATGTCATG GCTTTAGAAG CTTAAAAAGT
        361 ACATGTGTAA TAGCTCCTCT CTTGAAGGAG CTATTACACA TGTACGGGGA TCTGTGGTCT
        421 CATACAGAAC TTATAAGATT CCCAAATCCA AAGACATTTC ACGTTTATGG TGATTTCCCA
        481 GAACACATAG CGACATGCAA ATATTGCAGG GCGCCACTCC CCTGTCCCTC ACAGCCATCT
        541 TCCTGCCAGG GCGCACGCGC GCTGGGTGTT CCCGCCTAGT GACACTGGGC CCGCGATTCC
        601 TTGGAGCGGG TTGATGACGT CAGCGTTCGA ATTAGCTTGA TAGCTTAAAA AGGACACAAT
        661 GAGATTAGAT TCTCTTGAAA TCTAATCTCA TTGTGTCCGG GGATCTGTGG TCTCATACAG
        721 AACTTATAAG ATTCCCAAAT CCAAAGACAT TTCACGTTTA TGGTGATTTC CCAGAACACA
        781 TAGCGACATG CAAATATTGC AGGGCGCCAC TCCCCTGTCC CTCACAGCCA TCTTCCTGCC
        841 AGGGCGCACG CGCGCTGGGT GTTCCCCGCC TAGTGACACT GGGCCCGCGA TTCCTTGGAG
        901 CGGGTTTGAT GACGTCAGCG TTCGAATTAT CGGAATTCCG AAAGTTCCTA TTCTCTAGAA
        961 AGTATAAGGA AACTTCAGGT CCTGGAAGAG GAGTTTTACG TCCCAGGAAT ATCCTTAGTT
       1021 TATAATAGTA ATCAAATTAA CCGGGGTCCA TTAGTTTCAA TAGGCCGATA TTATGGGAGT
      1081 TCGCGGTTAC AATAACCTTT AACGGGGT
      //
      Primer: mRFP-inner1
      Sequence file: RDB16063_A8Idd.seq check
      >D05854A4-2_A8Id_mRFP1-inner1_D02_11_ABI24.ab1
          1 GCAAGCGGGT GGGGAGTGAC CAGGACTCCT CCCTGCAGGA CGGCTCCTTC ATCTACAAGG
         61 TGAAGTTCAT CGGCGTGAAC TTCCCCTCCG ACGGCCCCGT AATGCAGAAG AAGACTATGG
        121 GCTGGGAGGC CTCCACCGAG CGCCTGTACC CCCGCGACGG CGTGCTGAAG GGCGAGATCC
        181 ACAAGGCCCT GAAGCTGAAG GACGGCGGCC ACTACCTGGT GGAGTTCAAG TCTATCTATA
        241 TGGCCAAGAA GCCCGTGCAG CTGCCCGGCT ACTACTACGT GGACTCCAAG CTGGACATCA
        301 CCTCCCACAA CGAGGACTAC ACCATCGTGG AGCAGTACGA GCGCGCCGAG GGCCGCCACC
        361 ACCTGTTCCT GTAGCGGCCG CGATCAATTC TCTAGAGCTC GCTGATCAGC CTCGACTGTG
        421 CCTTCTAGTT GCCAGCCATC TGTTGTTTGC CCCTCCCCCG TGCCTTCCTT GACCCTGGAA
        481 GGTGCCACTC CCACTGTCCT TTCCTAATAA AATGAGGAAA TTGCATCGCA TTGTCTGAGT
        541 AGGTGTCATT CTATTCTGGG GGGTGGGGTG GGGCAGGACA GCAAGGGGGA GGATTGGGAA
        601 GACAATAGCA GGCATGCTGG GGATGCGGTG GGCTCTATGG CTTCTGAGGC GGAAAGAACC
        661 AGCTGGGGCT CGACTAGAGC TTGCGGAAAA GCTAATTCCT ATCACAAACT AGGGGATCTA
        721 GCTTGTGGAA GGCTACTCGA AATGTTTGAC CCAAGTTAAA CAATTTAAAG GCAATGCTAC
        781 CAAATACTAA TTGAGTGTAT GTAAACTTCT GACCCACTGG GAATGTGATG AAAGAAATAA
        841 AAGCTGAAAT GAATCATTCT CTCTACTATT ATTCTGATAT TTCACATTCT TAAAATAAAG
        901 TGGTGATCCT AACTGACCTA AGACAGGGAA ATTTTTACTA GGATTAAATG TCAGGAATTG
        961 TGAAAAAAGT GAGTTTAAAT GTATTTGGCT AAGTGTATGT AAACTTCCGA CTTCACTGTA
       1021 TAGGAATCCT CTAGCTAGAG TCGAACCTTC GAAGGGGGAG CCGGTAACCC CAAGCCATTT
      1081 TTGAC
      //

      Please visit Sequencing and PCR primers for primer information.


      References

      Original, user report and related articles

      original Sumiyoshi, K., Spontaneous development of intratumoral heterogeneity in a transposon-induced mouse model of glioma. Cancer Sci. 109 (5): 1513-1523 (2018). PMID 29575648.

      2022.05.17

      GNP_filter3_RDBDEP_html_220516.pl