Bifidobacterium longum–E. coli shuttle vector.
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External Database Reference sequence |
Sequence (full) ![]() |
RDB15972zzk01.seq provided by the depositor |
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Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
Terms and conditions for distribution | In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of the following literature designated by the DEPOSITOR is requested. (Hirayama et al., Appl. Environ. Microbiol., 78(14):4984-4994 (2012)). The availability of the BIOLOGICAL RESOURCE is limited to a not-for-profit academic purpose. |
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Ordering | Please visit Information of Request for Distribution.[link] Order form [Credit Card Payment ![]() ![]() Material Transfer Agreement (MTA for use for not-for-profit academic purpose) [Word ![]() |
提供条件 | 利用者は、研究成果の公表にあたって寄託者の指定する文献を引用する(Hirayama et al., Appl. Environ. Microbiol., 78(14):4984-4994 (2012))。本リソースは,非営利の学術研究に限って提供する。 |
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提供依頼 | 手続きの詳細は、「提供申込みについて[link]」をご覧ください。 提供依頼書 [Word ![]() 提供同意書 (MTA、非営利機関による非営利学術研究用)[Word ![]() |
Catalog # | Resource name | Shipping form | Fee (non-profit org.) |
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RDB15972 | pTBR101-CM | DNA solution |
Materials & Methods section:
The pTBR101-CM was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan (cat. RDB15972). |
Reference section:
Hirayama, Y., Sakanaka, M., Fukuma, H., Murayama, H., Kano, Y., Fukiya, S., Yokota, A., Development of a double-crossover markerless gene deletion system in Bifidobacterium longum: functional analysis of the α-galactosidase gene for raffinose assimilation. Appl. Environ. Microbiol. 78 (14): 4984-4994 (2012). PMID 22582061. [link to RRC of NBRP] |
Further references such as user reports and related articles (go to bottom)
Featured content
Featured content | Bacteria host strains (en) (English text) |
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Featured content | Bacteria host strains (ja) (Japanese text) |
RIKEN BRC has sequenced portions of this material for quality test.
Please review the QC test results indicated by icon as well as clone information before placing your order.
Test sheet | RDB19984_B3Eip1-1.pdf ![]() |
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Nucleotide sequence of a portion of this resource (if available).
Primer: tetA_mid_F (Pr1320) Region: insert(pTB4_p1 3') Sequence file: RDB19984_B3Eia.seq ![]() |
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>15972_19984_B3Ei_2_tetA_mid_F_A01_01_ABI08.ab1 1 NNNNNNNNNN NNNNNNNNNN GGNNNCNNTA TCGNCTACGC GATCATGGCG NCCACACCCG 61 TCCTGTGGAT CCTCATCAGC ACCACCCGCG ACACGAACGT ATTACATACG CAATCATATC 121 AGTGTCACAC ATCAGGTACA ACCGTACCGC AACACGCTTC GAGCGGACGC AAGCGGCTTT 181 TGCGCGGAGC ATTTCCGGCC ATTTGCCCAG CTTGTTCCGC GCTTCCGAGA AGGTGTGGAG 241 TTGGGTTTTC TGTGATGCCG CGCGAGCGGT CTGGAGGCTC CGCCGACCAT GGGGCATGGG 301 TCTTCCCGGC AAGCCGATTC GCACCGCGAA TCGAGTGATT GTAGCTACAA TCACGTCGCT 361 TGCTACTCCG GCCTTCGGCA CTCGGGTTGT TGCTCCTGCG CCGAAGGGCG AGGGAGGCTG 421 CGGGCTCGGT TCATGTACAT GAACCGTCTA GCTTGCTTAC CTTCGATTTG ATGGACATCT 481 CCATGTGGAT GTCCATGGAG ATGTCCATGG AGATGTCCAT GGAGATGTCC ATGGAGATGT 541 CCATGGAGAT GTCCATGTGG GTGTCCATGT GGGTGTCCAT GGATATATCC ATCTGAGCGC 601 ATAGGAAAAC GCATGAGGGT GGATGATCGT TCGGGGTGAT GCCTTCTTCC NCGAACGGGA 661 AGGGGCTCTT CCTTTTTCTG GAATGTCATC TTCCAGCGCC CTTCGCCTTG AGCTCCTTGA 721 NCAGCATCGT CGCGTTGTCG CGGATGCTCG CGTCCGTGAN CGGGGANAGC TCGTCCGCAT 781 ANGANCGGCA GANGANCGCG TACANNNNNT CCCGCACCCA GGCGCTGCGC GCGATGCCCA 841 NCTTGAACGC GGCCCGGCNC ANCATCTCGT ATNCGTCGCC NNNGANCAGG NNNTTGANCT 901 NGNGNNNAAA NNNGATTANN CNTGNCNNNN ATATACNNNC CGGGGNNNTT NNNNNNNNNN // |
Primer: lacIpro_R1 (Pr0762) Region: insert(pTB4_p3,pTB4_p2) Sequence file: RDB19984_B3Eib.seq ![]() |
>15972_19984_B3Ei_2_lacIpro_R1_E01_05_ABI08.ab1 1 NNNNNNNNNN NNNNNNNNNN NNNNNNACNN GCGCTCNTGA NCCCGAAGTG GCGAGCCCGA 61 TCTTCCCCAT CGGTGANGTC GGCGATATAG GCGCCAGCAA CCGCACCTGT GGCGCCGGTG 121 ATGCCGGCCA CGATGCGTCC GGCGTAGAGG ATCCAGGTGC TTGACAGGGT GATGGAGCGT 181 CACCCAGAAC TGTCCGAGAA GGACGTGGTG ACCGCGTTCC GCAGCGTCAT GGTGGACGCG 241 GAGCGCGAGT CCGGCGCGTG GATGGCGATA GGGCTCGACG GGCGCGGCAG GAACGTCGAG 301 ATGCTGTACA GGGTCGTCGG CGACCTCGTG GTGATCTACC ACGCGTTCAC GCCGCCGACC 361 AAGAAGTTCA GGCGCGAGAT AGACCGTCTG CGCGGCGATG GGAGGACGCT ATGAGTGATT 421 TCAGCGAACG CGACAGGCAG TTGATGGCGC TGGTCGGGCT GACCGAGGAG CAGGTGCTGG 481 AGGATGAGCG GATGGCCGAG TCCGAGACTG TCCCGGACGA CCTGACGGGG CGCGTGTACT 541 ACGGGCTCCA TCTCGCCGAG CCCGACGAGC AGATGGTCAG CGTGTCCGTC CGCATGCCCA 601 AGAGCACGCT GGACGGTCTG ACCGCGATGG CCAGGCGGTA CCACATCAGC CGCAGCGAGT 661 ACATGCGCCG TAAGCTCGCT GGAGCGATCT GAGACCTGTC AGGCCGATGG TTCGAATCAC 721 GTAACACCCG CGCACCACCG TGAGGATGTG CGGGTGTTAC GTGATGTGCC ACAGTCGTGG 781 CACGATGCCG CGNGAGCGGT CTGGANGCTC TGCCGACTAN NGGGGCATGG GTCTTCCCNG 841 CNNGCCGATT CNCACCNCNN NNCGAGNGNA NCGTATATNC GTNCACGTNN NTTGNNACNN 901 CNNGNNNNNN NNNN // |
Primer: pBS423_seq3_3 (Pr0751) Region: insert(repA mid) Sequence file: RDB19984_B3Eic.seq ![]() |
>15972_19984_B3Ei_2_pBS423_seq3_3_G01_07_ABI08.ab1 1 NNNNNNNNNN NNNNNNNNNN NNNGNGNCTT CCCCNNCGTC CCCTGTGCTG CGNCGATGAC 61 TACTCCCAGC TGGTGCNNNN GNNCCGCATC GACGCGCTCA GATGCAAGCA CATCGAGGCG 121 AATCCGGCAG CGCAGGTGAA CATGCTCGTT GTTGACGTTG ATTCGTCTGA GGGCCGTTTA 181 ATGAGCCTGT GGGGGCATCG GGACATGCCG CCCAACTTCA TCGCGGAGAA TCCGGCCAAC 241 GGCCACTGCC ACGCGGGCTG GGTGCTCACC GAACCCGTCT GCCGCACCGA CATGGCCAGA 301 CTCAAGCCCC TGAAGCTCCT GCACGCCGTC ACCGAGGGGC TGCGCCGCAG CGTGGACGGC 361 GACGAGGGCT ATTCCGGCCT GCTCATGAAG AACCCGTTGA GCGACGCGTG GGACAGCGAC 421 CTGTGCCGCG AGGACACCTA CGACCTGCCC GACCTCGTGG CCGCGCTCGA AGCGCACGGG 481 GACATGCCGC CCAAGAGCTG GACGCGCACC AAACGCGCCC GCGAGGTCGG AGTGGGCCGC 541 AACTGCACCC TGTTCGACGA GGCCCGCACC CTCGCCTACC GCGAGGTGCG CCGACTGCCT 601 GACCGCACGC CCGCCTCCTC CGACCTGCTG CGCGAGTACG TGCGCCGCAC CTGCCACGAA 661 ATCAACGCCT CGTTCCCCGA CCCGCTGCCC GTGCGCGAGG TCAACGACAC CGCCNAGAGC 721 ATCCACAAGT GGATCACCAC GCGAAGCCGC ATGTGGCGAG ACGGTGCCGT CGCCNACGCC 781 GCCACGTTCG TCGCCATCCA ATCCGCACGC GGAAAGAAAT CNGGGCNANG NCAGACAAAA 841 CGNATTTGAA GANAAGTTCG CGNANTANGC GCANGNNGNG CNTGNNNNNN GANNNTCCNN 901 ANNNNTCNNN AGNNNNNCCN ATTGCCNNNN NNNGNNNNNN NCNNANNNNN NNNGGNNNNN 961 NNNNN // |
Primer: repA_F_rev2 (Pr1322) Region: insert(repA 5',pTB4_p1 5') Sequence file: RDB19984_B3Eid.seq ![]() |
>15972_19984_B3Ei_2_repA_F_rev2_D01_04_ABI08.ab1 1 NNNNNNNNNN NNNNNNNNNN NNNNNNNNGC CCTNNGANGA NCAACGTCAA CAACGAGCAT 61 GTTCACCTGC GCTGNNNNNN NTCGCCTCGA TGTGCTTGCA TCTGAGCGCG TCGATGCGGC 121 TCCGGCGCAC CAGCTGGGAG TAGTCATCGT CGCAGCACAG GGGACGCTGG GGAAGCCACC 181 AGCCGTCGAA CGCCCGCGTC AGCTCCAGCG TCCCCTGCAC ATATTCGTTG CTCATAGCTC 241 ACATCCTATT GCACATTTGT GCATTGCACA AGCGTGCGCC GAACCAAGTC AGATGGTTCA 301 GCCCAGCGAA GCGTCGGCTG TTCCTTCCCG GAGTGGCCCA AAACTGTTGG AATCTGGCCG 361 AAAACACCCC GGACGTATAT ACACGGCATG ACTAATCAAC TTTTGACGCC AGCTCAATGT 421 CCTGCTCACC GGCGACGAAT ACGAGATGCT GTGCCGGGCC GCGTTCAAGC TGGGCATCGC 481 GCGCAGCGCC TGGGTGCGGG AACGGGTGTA CGCGCTCCTC TGCCGCTCCT ATGCGGACGA 541 GCTCTCCCCG CTCACGGACG CGAGCATCCG CGACAACGCG ACGATGCTGC TCAAGGAGCT 601 CAAGGCGAAG GGCGCTGGAA GATGACATTC CAGAAAAAGG AAGAGCCCCT TCCCGTTCGT 661 GGAAGAAGGC ATCACCCCGA ACGATCATCC ACCCTCATGC GTTTTCCTAT GCGCTCAGAT 721 GGATATATCC ATGGACACCC ACATGGACAC CCACATGGAC ATCTCCATGG ACATCTCCAT 781 GGACATCTCC ATGGNCATCT CCATGGACAT CTCCATGNAC ATCCACATGG AGATGTCCAT 841 CAAATCNNAN NNTNNNCAAG CTAGANGGTN CATGTACNTG AANCGANCCC GCNNCCTCCN 901 NNNNCNTNCN GNNNNNNNCN NCNNNCCNAN NGNCGAANNN NNNNNNN // |
Primer: repB_F_rev (Pr1321) Region: insert(repB 5',repA 3') Sequence file: RDB19984_B3Eie.seq ![]() |
>15972_19984_B3Ei_2_repB_F_rev_E01_05_ABI08.ab1 1 NNNNNNNNNN NNNNNNNNNN NNNNNNNANG CCTCGGCTAA CTCCTTGGCG GGCAATGGGC 61 GCTTCTTGCG AATTGNNTGG ATGGTCATTG TCCAAGCACC TCCTGCGCGT ACTGCGCGAA 121 CTTCTCTTCA AATGCGTTTT GTCTGGCCTC GCCCGATTTC TTTCCGCGTG CGGATTGGAT 181 GGCGACGAAC GTGGCGGCGT TGGCGACGGC ACCGTCTCGC CACATGCGGC TTCGCGTGGT 241 GATCCACTTG TGGATGCTCT TGGCGGTGTC GTTGACCTCG CGCACGGGCA GCGGGTCGGG 301 GAACGAGGCG TTGATTTCGT GGCAGGTGCG GCGCACGTAC TCGCGCAGCA GGTCGGAGGA 361 GGCGGGCGTG CGGTCAGGCA GTCGGCGCAC CTCGCGGTAG GCGAGGGTGC GGGCCTCGTC 421 GAACAGGGTG CAGTTGCGGC CCACTCCGAC CTCGCGGGCG CGTTTGGTGC GCGTCCAGCT 481 CTTGGGCGGC ATGTCCCCGT GCGCTTCGAG CGCGGCCACG AGGTCGGGCA GGTCGTAGGT 541 GTCCTCGCGG CACAGGTCGC TGTCCCACGC GTCGCTCAAC GGGTTCTTCA TGAGCAGGCC 601 GGAATAGCCC TCGTCGCCGT CCACGCTGCG GCGCAGCCCC TCGGTGACGG CGTGCANGAG 661 CTTCAGGGGC TTGAGTCTGG CCATGTCGGT GCGGCAGACG GGTTCGGTGA GCACCCAGCC 721 CGCGTGGCAG TGGCCGTTGG CCGGANTCTC CGCGATGAAG TTGGGCGGCA TGTCCCGATG 781 CCCCCACANG CTCATTAAAC GGCCCTCAGA CNAATCANCG TCNACAACNA NCATGTTCAC 841 CTGCGCNGNC NGNATTCNCC NCNATGNGCT NGNNTCTGAN CGCGNNNATG NNGNNNCNNG 901 NNNANNNNCN GGGNNNANNN ATCNNCNNNN CNNNNGGNNN NNNNGGNNNN NNNNNN // |
Primer: pTBR101CM_seq7 (Pr0561) Region: insert(repB 3',pTB4_p2,pTB4_p3 3') Sequence file: RDB19984_B3Eif.seq ![]() |
>15972_19984_B3Ei_2_pTBR101CM_seq7_F01_06_ABI08.ab1 1 NNNNNNNNNN NNNNNNNTCC NNCGNCTNNN NCGNNNNNGN NGGCNNCTCG TGGNNCCAGA 61 CCGCCGAACA CTTCAACNTG NCCCAAGGTG CCGTGCGCCA ACGCGCCTAC CGCGCCCGCA 121 AGGAACGCGA GGCCGAGGCA AAAGCCGCAA GGCCGGAGTA GCAAGTGACG TGAACGTATA 181 TACGTTCACT CGATTCGCGG TGCGAATCGG CTTGCCGGGA AGACCCATGC CCCATAGTCG 241 GCAGAGCCTC CAGACCGCTC ACGCGGCATC GTGCCACGAC TGTGGCACAT CACGTAACAC 301 CCGCACATCC TCACGGTGGT GCGCGGGTGT TACGTGATTC GAACCATCGG CCTGACAGGT 361 CTCAGATCGC TCCAGCGAGC TTACGGCGCA TGTACTCGCT GCGGCTGATG TGGTACCGCC 421 TGGCCATCGC GGTCAGACCG TCCAGCGTGC TCTTGGGCAT GCGGACGGAC ACGCTGACCA 481 TCTGCTCGTC GGGCTCGGCG AGATGGAGCC CGTAGTACAC GCGCCCCGTC AGGTCGTCCG 541 GGACAGTCTC GGACTCGGCC ATCCGCTCAT CCTCCAGCAC CTGCTCCTCG GTCAGCCCGA 601 CCAGCGCCAT CAACTGCCTG TCGCGTTCGC TGAAATCACT CATAGCGTCC TCCCATCGCC 661 GCGCAGACGG TCTATCTCGC GCCTGAACTT CTTGGTCGGC GGCGTGAACG CGTGGTAGAT 721 CACCACGANG TCGCCGACGA NCCTGTACAG CATCTCGACG TTCCTGCCGC GCCCGTCGAN 781 NCCTATCGCC ATCCACGCGC CGGANTCGCG CTCCGCGTCC ACCATGACGC TGCGGAACGC 841 GGNCACCACG TCCTTCTCGG ANAGTTCTGG GNGANGCTNC ATCACCCNGN NNNGCNCCNN 901 NNNTNCNCTA CNCCNNANGC NTCNNNNNCN NGNNTCACNN GCNNNNNNNG NNNNNGNNNN 961 NNGNNNNNNN NNN // |
Primer: pBR_EcoRI_R (Pr0139) Region: CmR Sequence file: RDB19984_B3Eig.seq ![]() |
>15972_19984_B3Ei_2_pBR_EcoRI_R_C01_03_ABI08.ab1 1 NNNNNNNNNN NNNNNNNNNN NNCGCNNTGT NAGNNTTNNT ACACGGNGCC TGNNTGCGTT 61 AGCAATTTAA CTGTGATANN NNACCGCATT AACAAGCTTG CGGCAATAGT TACCCTTATT 121 ATCAAGATAA GAAAGAAAAG GATTTTTCGC TACGCTCAAA TCCTTTAAAA AAACACAAAA 181 GACCACATTT TTTAATGTGG TCTTTTATTC TTCAACTAAA GCACCCATTA GTTCAACAAA 241 CGAAAATTGG ATAAAGTGGG ATATTTTNAA AATATATATT TATGTTACAG TAATATTGAC 301 TTTTAAAAAA GGATTGATTC TAATGAAGAA AGCAGACAAG TAAGCCTCCT AAATTCACTT 361 TAGATAAAAA TTTAGGAGGC ATATCAAATG AACTTTAATA AAATTGATTT AGACAATTGG 421 AAGAGAAAAG AGATATTTAA TCATTATTTG AACCAACAAA CGACTTTTAG TATAACCACA 481 GAAATTGATA TTAGTGTTTT ATACCGAAAC ATAAAACAAG AAGGATATAA ATTTTACCCT 541 GCATTTATTT TCTTAGTGAC AAGGGTGATA AACTCAAATA CAGCTTTTAG AACTGGTTAC 601 AATAGCGACG GAGAGTTAGG TTATTGGGAT AAGTTAGAGC CACTTTATAC AATTTTTGAT 661 GGTGTATCTA AAACATTCTC TGGTATTTGG ACTCCTGTAA AGAATGACTT CAAAGAGTTT 721 TATGATTTAT ACCTTTCTGA NGTAGAGAAN TATAATGGTT CGGGGAAATT GTTTCCCNAA 781 ACACCTATAC CTGAAAATGC TTTTTCTCTT TCTATTATTC CATGGACTTC ATTTACTGGG 841 TTTAACTTAA ANTATCAATA ATAATANNAN NTNNCTTCTA CCCNTTATTA CAGCNNNAAA 901 ANTCATTANN NAANGNAATT CNANNTATTT ANNNCTNTNT TTACNNGNNN NNTNNNNNNN 961 NTNNNNNNNN NN // |
Please visit Sequencing and PCR primers for primer information.
Original, user report and related articles
original | Hirayama, Y., Development of a double-crossover markerless gene deletion system in Bifidobacterium longum: functional analysis of the α-galactosidase gene for raffinose assimilation. Appl. Environ. Microbiol. 78 (14): 4984-4994 (2012). PMID 22582061. [link to RRC of NBRP] |
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reference | Nishiyama, K., Bifidobacterium bifidum Extracellular Sialidase Enhances Adhesion to the Mucosal Surface and Supports Carbohydrate Assimilation. MBio 8 (5). pii: e00928-17 (2017). PMID 28974612. |
reference | Fukiya, S., Development of practical gene-mutagenesis systems in bifidobacteria. (Japanese text) Seibutsu-kogaku 94 (3): 110-116 (2016). |
2023.06.14
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