Complete genome of BK virus, lineage Ib 1
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External Database Hum_Polyoma BKV Reference sequence |
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Terms and conditions for distribution | In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature(s) designated by the DEPOSITOR is requested. (J. Mol. Evol., 63, 341-352 (2006)) |
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Ordering | Please visit Information of Request for Distribution.[link] For for-profit-research purpose, please contact us. Order form [Credit Card Payment] [Bank Transfer Payment] Material Transfer Agreement (MTA for use for not-for-profit academic purpose) [Word] |
提供条件 | 利用者は、研究成果の公表にあたって寄託者の指定する文献を引用する (J. Mol. Evol., 63, 341-352 (2006))。 |
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提供依頼 | 手続きの詳細は、「提供申込みについて[link]」をご覧ください。営利目的利用についてはお問い合わせください。 提供依頼書 [Word] 提供同意書 (MTA、非営利機関による非営利学術研究用)[Word] |
Catalog # | Resource name | Shipping form | Fee (non-profit org.) |
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RDB07264 | pKOM-5 | DNA solution |
Materials & Methods section:
The pKOM-5 was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan (cat. RDB07264). |
Reference section:
Further references such as user reports and related articles (go to bottom)
Featured content
RIKEN BRC has sequenced portions of this material for quality test.
Please review the QC test results indicated by icon as well as clone information before placing your order.
Test sheet | RDB07264_A8F5p1-2.pdf |
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Nucleotide sequence of a portion of this resource (if available).
Primer: reverse-2 (Pr0100) Region: insert 5' Sequence file: RDB07264_A8F5a.seq |
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>07264_07264_A8F5_1_Reverse2_E02_14_ABI24.ab1 1 ATAACGCATT ACGCCAAGCT TGCATGCCTG CAGGTCGACT CTAGAGGATC CCCCATTTCT 61 GGGTTTAGGA AGCATTCTAC CTCTGTTATA GCATCTACCC CAGTTTTAAC TTCTAGAACT 121 TCTACTCCTC CTTTTATTAG TAGTTTTGGC ACTTGCACGG GTTCCTTTGG CTTTTTGGGA 181 GCTGCCCCTG GACACTCTCC TTTTCTTTTG GTTGGGGCCA TCTTCATATG CTTCAAGAGC 241 AGGTGTTACA GTCCCGTACA GGCCTAGAAG TAAAGGCAAC ATCCATTGAG GAGCAGTTCT 301 TTGATTAGCA CCTCCTGGGG CAATAGTTTT TTCTATAAAC TCTCCTGAAT GTACAGTTTG 361 TTGATTTCTT AAGTCCATTC TTTGTGTAAC TTCTTCTATA CTGTCAGCAT CATCTATACT 421 ATAAGTATGG CCAAAATGTA CACGGGTACC TTCCCTTTCA GCCACTTGTC TAACCATTGA 481 GGGCCTAATA GGGGAAAGAT CAGAATAATA TTCTTGAATA TAATTATAAA AGTTTATAGG 541 GGCATTTACA ATTGTCCAGG TAGTTTCCTC CAAAAATCTA GCCAAGGAGT CTCTAAAAAA 601 TCTTTCTGTT CTTCTTTGCA ATTCTTGTGA GGTTATAGCA GGTATATCAT CCCTAATAAC 661 ATGCCACAAA GCCTGGGAAA TAGTAGCAAA CAAGGAAGGA CCCCAATGCC TAGGATCAAG 721 GTATTGAATA TTATTTACAA AAGTATTTAC ACCAGGAAAC AAAATATCAT AGTACTCATC 781 TGGGTTAAAC AATTCCAAAG CCATGCCTGA TTGCTGATAG AGGCCTACAG TGGAAACTTT 841 GTGATCCCAA TCACTAAAAA AACCTATACC CTACTTGAGC CAAGGAACTA ATACCAGTAA 901 CAGTTTTGAA TTAAAGCAGC AAACCCAGCA ATAGCCCCAG GAGCACCAGC AATTACAGCA 961 TATGTTTGAG GAGTTAGGCC TATAGCAGCT ATAGCCTCTG AGGTACTTTG TATGCCCTCT 1021 ACAGTAGCAA CGGAATGCCA TTTTGAAACC TTCTATAGGC AGGCAGGCAG GTCCGTCCCT 1081 CAAGGTCAGT CAAATC // |
Primer: M13_-40 (Pr0410) Region: insert 3' Sequence file: RDB07264_A8F5b.seq |
>07264_07264_A8F5_1_20_M13_-40_G01_07_ABI08.ab1 1 AAAGCAAGGG ATTCGAGGCT CGGTACCCGG GGATCCAGAT GAAAACCTTA GGGGCTTTAG 61 TCTAAAGCTA AGTGCTGAAA ATGACTTTAG CAGTGATAGC CCAGAAAGAA AAATGCTTCC 121 CTGTTACAGC ACAGCAAGAA TTCCCCTCCC CAATTTAAAT GAGGACCTAA CCTGTGGAAA 181 TCTACTGATG TGGGAGGCTG TAACTGTACA AACAGAGGTC ATTGGAATAA CTAGCATGCT 241 TAACCTTCAT GCAGGGTCAC AAAAAGTGCA TGAGCATGGT GGAGGTAAAC CTATTCAAGG 301 CAGTAATTTC CACTTCTTTG CTGTTGGTGG AGACCCCTTG GAAATGCAGG GAGTGCTAAT 361 GAATTACAGG ACCAAGTACC CAGATGGTAC TATAACCCCA AAAAACCCAA CAGCCCAGTC 421 CCAGGTAATG AATACTGACC ATAAGGCCTA TTTGGACAAA AACAATGCTT ATCCAGTTGA 481 GTGCTGGGTT CCTGATCCTA GTAGAAATGA AAATACTAGG TATTTTGGGA CTTTCACAGG 541 AGGGGAAAAT GTTCCCCCAG TACTTCATGT GACCAACACA GCTACCACAG TGTTGCTAGA 601 TGAACAGGGT GTGGGGCCTC TTTGTAAAGC TGATAGCCTG TATGTTTCAG CTGCTGATAT 661 TTGTGGCCTG TTTACTAACA GCTCTGGAAC ACAACAGTGG AGAGGCCTTG CAAGATATTT 721 TAAGATTCGC CTGAGAAAAA GATCTGTAAA AAATCCTTAC CCAATTTCCT TTTTGCTAAG 781 TGACCTTATA AACAGGAGAA CCCAGAGAGT GGATGGGCAG CCTATGTATG GTATGGAATC 841 CCAGGTAGAA GAGGTTAGGG TGTTTGATGG CACAGAAAGA CTTCCAGGGG ACCCAGATAT 901 GATAAGATAT ATTGATAAAC AAGGACAATT GCAAACCAAA ATGCTTTAAA CAGGGTGCTT 961 TTATTGTACA TATACATTTA ATAAATGCTG CTTTTGTATA AGCCACTTTT TAAGCTTTGT 1021 GTTATTTTGG GGGTGGGTGT TTTAGGCCTT TTAAAACATT GAAAGCCTTT ACACAAATGC 1081 AACTCTTGAC TATGGGGATC TACTTGGCAT CTTCAGCCAG GGGCTGAAGG TAATTTCTTG 1141 GA // |
Primer: Bkvirus_F1 (Pr0564) Region: insert mid Sequence file: RDB07264_A8F5c.seq |
>07264_07264_A8F5_1_BKvirus_F1_C03_09_ABI24.ab1 1 CCATTCTGAT CTTCTTCTCT TGTGATATCA AGAATACATT TCCCCATGCA TATATTATAT 61 TTCATCCTTG AAAAAGTATA CATACTTATC TCAGAATCCA GCCTTTCCTT CCATTCAACA 121 ATTCTAGATT GTATATCTGT TGCAAAATCA GCTACAGGCC TAAACCAAAT TAGCAGTAGC 181 AACAAGGTCA TTCCACTTTG TAAAATTCTT TTTTCAAGTA AGAACTCTGA GTTTTGTAAG 241 GATTTTCTTA AATATATTTT GGGTCTAAAA TCTATCTGTC TTACAAATCT AGCCTGCAGG 301 GTTTTAGGAA CAGGATACTC ATTCATTGTA ACCAGGCCTG GTGGAAATAT TTGGGTTCTT 361 TTGTTTAAAT GTTTCTTTTC TAAATTAACC TTAACACTTC CATCTAAATA ATCTCTCAAA 421 CTGTCTAAAT TGTTTATTCC ATGTCCTGAA GGCAAATCCT TTGATTCAGC CCCTGTTCCT 481 TTTACATCTT CAAAAACAAC CATGTACTGA TCTATAGCTA CACCTAGTTC AAAGGTTAGC 541 CTTTCCATGG GTAGGTTTAC ATTTAAGGCT TTACCTCCAC ACAAATCTAA TAACCCTGCA 601 GCTAGTGTTG TTTTTCCACT ATCAATGGGA CCTTTAAATA ACCAGTATCT TCTTTTAGGT 661 ACATTAAAAA CAATACAGTG CAAAAAATCA AATATAACAG AATCCATTTT AGGTAGCAAA 721 CAGTGCAGCC AAGCAACACC TGCCATATAT TGTTCCAGTA CAGCATTTCC ATGAGCTCCA 781 AATATTAAAT CCATTTTATC TAATATATGA TTAAATCTTT CTGTTAGCAT TTCTTCTCTG 841 GTCATATGAA GGGTATCTAC TCTTTTTTTT TAGCTAAAAA CTGTATCTAC TGCTTGCTGA 901 CAAATACTTT TTTTGATTTT TTACTTTCTG CAAAAAATAG TAGCATTTTG CAAAATGCTT 961 TTTCATGATA CTTAAAGTGA TAAAGGTTGG TCTTTTTTTT TCTGACACTT CTTTACACTC 1021 CTTCCTACCA TTGTATTGAA GTTCTAAAAT ACCATAGCGG ATTAGTAAAA ACACATCGTC 1081 CAACACCTTG // |
Please visit Sequencing and PCR primers for primer information.
Original, user report and related articles
original | Nishimoto, Y., Evolution of BK virus based on complete genome data. J. Mol. Evol., 63, 341-352 (2006). PMID 16897259. |
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2023.05.01
GNP_filter3_RDBDEP_html_230501.pl