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pKOM-5

Complete genome of BK virus, lineage Ib 1

Catalog number RDB07264
Resource name pKOM-5
Clone info. Complete genome of BK virus, lineage Ib 1. BKV genomic DNA derived from the urine of a Japanese bone marrow transplant patient.
Vector backbone pUC19 (Plasmid)
Size of vector backbone 2,690 bp
Selectable markers Amp^r
Gene/insert name Hum_Polyoma BKV genomic DNA
Reference of insert sequence AB211374 (DDBJ accession number)
Depositor|Developer Yogo, Yoshiaki |
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External Database
Hum_Polyoma BKV

            Reference sequence
              
             

            Distribution information

            Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
            Terms and conditions for distribution In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature(s) designated by the DEPOSITOR is requested. (J. Mol. Evol., 63, 341-352 (2006))
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            提供条件 利用者は、研究成果の公表にあたって寄託者の指定する文献を引用する (J. Mol. Evol., 63, 341-352 (2006))。
            提供依頼 手続きの詳細は、「提供申込みについて[link]」をご覧ください。営利目的利用についてはお問い合わせください。
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            提供同意書 (MTA、非営利機関による非営利学術研究用)[Word]

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            RDB07264 pKOM-5 DNA solution

            Please review the QC test results indicated by check icon below as well as clone information before placing your order.

            How to cite this biological resource

            Materials & Methods section:

            The pKOM-5 was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan (cat. RDB07264).

            Reference section:

            Nishimoto, Y., Takasaka, T., Hasegawa, M., Zheng, H.Y., Chen, Q., Sugimoto, C., Kitamura, T., Yogo, Y., Evolution of BK virus based on complete genome data. J. Mol. Evol., 63, 341-352 (2006). PMID 16897259.

            Further references such as user reports and related articles (go to bottom)


            References and tips

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            QC test results

            RIKEN BRC has sequenced portions of this material for quality test.
            Please review the QC test results indicated by check icon as well as clone information before placing your order.

            Test sheet RDB07264_A8F5p1-2.pdf check

            Nucleotide sequence of a portion of this resource (if available).

            Primer: reverse-2 (Pr0100)
            Region: insert 5'
            Sequence file: RDB07264_A8F5a.seq check
            >07264_07264_A8F5_1_Reverse2_E02_14_ABI24.ab1
                1 ATAACGCATT ACGCCAAGCT TGCATGCCTG CAGGTCGACT CTAGAGGATC CCCCATTTCT
               61 GGGTTTAGGA AGCATTCTAC CTCTGTTATA GCATCTACCC CAGTTTTAAC TTCTAGAACT
              121 TCTACTCCTC CTTTTATTAG TAGTTTTGGC ACTTGCACGG GTTCCTTTGG CTTTTTGGGA
              181 GCTGCCCCTG GACACTCTCC TTTTCTTTTG GTTGGGGCCA TCTTCATATG CTTCAAGAGC
              241 AGGTGTTACA GTCCCGTACA GGCCTAGAAG TAAAGGCAAC ATCCATTGAG GAGCAGTTCT
              301 TTGATTAGCA CCTCCTGGGG CAATAGTTTT TTCTATAAAC TCTCCTGAAT GTACAGTTTG
              361 TTGATTTCTT AAGTCCATTC TTTGTGTAAC TTCTTCTATA CTGTCAGCAT CATCTATACT
              421 ATAAGTATGG CCAAAATGTA CACGGGTACC TTCCCTTTCA GCCACTTGTC TAACCATTGA
              481 GGGCCTAATA GGGGAAAGAT CAGAATAATA TTCTTGAATA TAATTATAAA AGTTTATAGG
              541 GGCATTTACA ATTGTCCAGG TAGTTTCCTC CAAAAATCTA GCCAAGGAGT CTCTAAAAAA
              601 TCTTTCTGTT CTTCTTTGCA ATTCTTGTGA GGTTATAGCA GGTATATCAT CCCTAATAAC
              661 ATGCCACAAA GCCTGGGAAA TAGTAGCAAA CAAGGAAGGA CCCCAATGCC TAGGATCAAG
              721 GTATTGAATA TTATTTACAA AAGTATTTAC ACCAGGAAAC AAAATATCAT AGTACTCATC
              781 TGGGTTAAAC AATTCCAAAG CCATGCCTGA TTGCTGATAG AGGCCTACAG TGGAAACTTT
              841 GTGATCCCAA TCACTAAAAA AACCTATACC CTACTTGAGC CAAGGAACTA ATACCAGTAA
              901 CAGTTTTGAA TTAAAGCAGC AAACCCAGCA ATAGCCCCAG GAGCACCAGC AATTACAGCA
              961 TATGTTTGAG GAGTTAGGCC TATAGCAGCT ATAGCCTCTG AGGTACTTTG TATGCCCTCT
             1021 ACAGTAGCAA CGGAATGCCA TTTTGAAACC TTCTATAGGC AGGCAGGCAG GTCCGTCCCT
            1081 CAAGGTCAGT CAAATC
            //
            Primer: M13_-40 (Pr0410)
            Region: insert 3'
            Sequence file: RDB07264_A8F5b.seq check
            >07264_07264_A8F5_1_20_M13_-40_G01_07_ABI08.ab1
                1 AAAGCAAGGG ATTCGAGGCT CGGTACCCGG GGATCCAGAT GAAAACCTTA GGGGCTTTAG
               61 TCTAAAGCTA AGTGCTGAAA ATGACTTTAG CAGTGATAGC CCAGAAAGAA AAATGCTTCC
              121 CTGTTACAGC ACAGCAAGAA TTCCCCTCCC CAATTTAAAT GAGGACCTAA CCTGTGGAAA
              181 TCTACTGATG TGGGAGGCTG TAACTGTACA AACAGAGGTC ATTGGAATAA CTAGCATGCT
              241 TAACCTTCAT GCAGGGTCAC AAAAAGTGCA TGAGCATGGT GGAGGTAAAC CTATTCAAGG
              301 CAGTAATTTC CACTTCTTTG CTGTTGGTGG AGACCCCTTG GAAATGCAGG GAGTGCTAAT
              361 GAATTACAGG ACCAAGTACC CAGATGGTAC TATAACCCCA AAAAACCCAA CAGCCCAGTC
              421 CCAGGTAATG AATACTGACC ATAAGGCCTA TTTGGACAAA AACAATGCTT ATCCAGTTGA
              481 GTGCTGGGTT CCTGATCCTA GTAGAAATGA AAATACTAGG TATTTTGGGA CTTTCACAGG
              541 AGGGGAAAAT GTTCCCCCAG TACTTCATGT GACCAACACA GCTACCACAG TGTTGCTAGA
              601 TGAACAGGGT GTGGGGCCTC TTTGTAAAGC TGATAGCCTG TATGTTTCAG CTGCTGATAT
              661 TTGTGGCCTG TTTACTAACA GCTCTGGAAC ACAACAGTGG AGAGGCCTTG CAAGATATTT
              721 TAAGATTCGC CTGAGAAAAA GATCTGTAAA AAATCCTTAC CCAATTTCCT TTTTGCTAAG
              781 TGACCTTATA AACAGGAGAA CCCAGAGAGT GGATGGGCAG CCTATGTATG GTATGGAATC
              841 CCAGGTAGAA GAGGTTAGGG TGTTTGATGG CACAGAAAGA CTTCCAGGGG ACCCAGATAT
              901 GATAAGATAT ATTGATAAAC AAGGACAATT GCAAACCAAA ATGCTTTAAA CAGGGTGCTT
              961 TTATTGTACA TATACATTTA ATAAATGCTG CTTTTGTATA AGCCACTTTT TAAGCTTTGT
             1021 GTTATTTTGG GGGTGGGTGT TTTAGGCCTT TTAAAACATT GAAAGCCTTT ACACAAATGC
             1081 AACTCTTGAC TATGGGGATC TACTTGGCAT CTTCAGCCAG GGGCTGAAGG TAATTTCTTG
            1141 GA
            //
            Primer: Bkvirus_F1 (Pr0564)
            Region: insert mid
            Sequence file: RDB07264_A8F5c.seq check
            >07264_07264_A8F5_1_BKvirus_F1_C03_09_ABI24.ab1
                1 CCATTCTGAT CTTCTTCTCT TGTGATATCA AGAATACATT TCCCCATGCA TATATTATAT
               61 TTCATCCTTG AAAAAGTATA CATACTTATC TCAGAATCCA GCCTTTCCTT CCATTCAACA
              121 ATTCTAGATT GTATATCTGT TGCAAAATCA GCTACAGGCC TAAACCAAAT TAGCAGTAGC
              181 AACAAGGTCA TTCCACTTTG TAAAATTCTT TTTTCAAGTA AGAACTCTGA GTTTTGTAAG
              241 GATTTTCTTA AATATATTTT GGGTCTAAAA TCTATCTGTC TTACAAATCT AGCCTGCAGG
              301 GTTTTAGGAA CAGGATACTC ATTCATTGTA ACCAGGCCTG GTGGAAATAT TTGGGTTCTT
              361 TTGTTTAAAT GTTTCTTTTC TAAATTAACC TTAACACTTC CATCTAAATA ATCTCTCAAA
              421 CTGTCTAAAT TGTTTATTCC ATGTCCTGAA GGCAAATCCT TTGATTCAGC CCCTGTTCCT
              481 TTTACATCTT CAAAAACAAC CATGTACTGA TCTATAGCTA CACCTAGTTC AAAGGTTAGC
              541 CTTTCCATGG GTAGGTTTAC ATTTAAGGCT TTACCTCCAC ACAAATCTAA TAACCCTGCA
              601 GCTAGTGTTG TTTTTCCACT ATCAATGGGA CCTTTAAATA ACCAGTATCT TCTTTTAGGT
              661 ACATTAAAAA CAATACAGTG CAAAAAATCA AATATAACAG AATCCATTTT AGGTAGCAAA
              721 CAGTGCAGCC AAGCAACACC TGCCATATAT TGTTCCAGTA CAGCATTTCC ATGAGCTCCA
              781 AATATTAAAT CCATTTTATC TAATATATGA TTAAATCTTT CTGTTAGCAT TTCTTCTCTG
              841 GTCATATGAA GGGTATCTAC TCTTTTTTTT TAGCTAAAAA CTGTATCTAC TGCTTGCTGA
              901 CAAATACTTT TTTTGATTTT TTACTTTCTG CAAAAAATAG TAGCATTTTG CAAAATGCTT
              961 TTTCATGATA CTTAAAGTGA TAAAGGTTGG TCTTTTTTTT TCTGACACTT CTTTACACTC
             1021 CTTCCTACCA TTGTATTGAA GTTCTAAAAT ACCATAGCGG ATTAGTAAAA ACACATCGTC
            1081 CAACACCTTG
            //

            Please visit Sequencing and PCR primers for primer information.


            References

            Original, user report and related articles

            original Nishimoto, Y., Evolution of BK virus based on complete genome data. J. Mol. Evol., 63, 341-352 (2006). PMID 16897259.

            2023.05.01

            GNP_filter3_RDBDEP_html_230501.pl