Resource data sheet
Prev.
Please review the QC test results indicated by check icon below as well as clone information before placing your order.

pMT/clone 51

Complete genome of BK virus, lineage Ic

Catalog number RDB07258
Resource name pMT/clone 51
Clone info. Complete genome of BK virus, lineage Ic. BKV genomic DNA derived from the urine of a Japanese systemic lupus erythematosus patient.
Vector backbone pBR322 (Plasmid)
Size of vector backbone 4.3 kb
Selectable markers Amp^r
Gene/insert name Hum_Polyoma BKV genomic DNA
Reference of insert sequence AB485704 (DDBJ accession number)
Depositor|Developer Yogo, Yoshiaki |
Other clones in our bank

External Database
Hum_Polyoma BKV

            Reference sequence
              

            Distribution information

            Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
            Terms and conditions set forth by the DEPOSITOR In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature(s) designated by the DEPOSITOR is requested (J. Virol., 63, 3195-3199 (1989)).
            Ordering Please visit Information of Request for Distribution.[link] 
            Order form 
            [Credit Card Payment]  [Bank Transfer Payment]
            Material Transfer Agreement (MTA for use for not-for-profit academic purpose) [Word]
            提供案内 (日本国内) [open/close]

            提供条件 利用者は、研究成果の公表にあたって寄託者の指定する文献を引用する (J. Virol., 63, 3195-3199 (1989))。
            提供依頼 手続きの詳細は、「提供申込みについて[link]」をご覧ください。
            提供依頼書 [Word]
            提供同意書 (MTA、非営利機関による非営利学術研究用)[Word]

            Catalog # Resource name Shipping form Fee (non-profit org.)
            RDB07258 pMT/clone 51 DNA solution

            Ordering Information [in Japanese] [in English]
            Please review the QC test results indicated by check icon below as well as clone information before placing your order.

            References and tips

            Electronic file

            Original reference

            original Sugimoto, C., Growth efficiency of naturally occurring BK virus variants in vivo and in vitro. J. Virol., 63, 3195-3199 (1989). PMID 2542627.

            Further references such as user reports and related articles (go to bottom)

            Featured content


            Sequence information

            RIKEN BRC has sequenced portions of this material for quality test.
            Please review the QC test results indicated by check icon as well as clone information before placing your order.

            Test sheet RDB07258_A3Kj.pdf check

            Nucleotide sequence of a portion of this resource (if available).

            Primer:
            Sequence file: RDB07258_A3Kja.seq check
            >07258_07258_A3Kj_1_Amp_R_B12_06.ab1
                1 TCCATTTTCA TATTATTGAG CATTTATCAG GGTTATTGTC TCATGAGCGG ATACATATTT
               61 GAATGTATTT AGAAAAATAA ACAAATAGGG GTTCCGCGCA CATTTCCCCG AAAAGTGCCA
              121 CCTGACGTCT AAGAAACCAT TATTATCATG ACATTAACCT ATAAAAATAG GCGTATCACG
              181 AGGCCCTTTC GTCTTCAAGA ATTCTCATGT TTGACAGCTT ATCATCGATA AGCTTTAATG
              241 CGGTAGTTTA TCACAGTTAA ATTGCTAACG CAGTCAGGCA CCGTGTATGA AATCTAACAA
              301 TGCGCTCATC GTCATCCTCG GCACCGTCAC CCTGGATGCT GTAGGCATAG GCTTGGTTAT
              361 GCCGGTACTG CCGGGCCTCT TGCGGGATAT CGTCCATTCC GACAGCATCG CCAGTCACTA
              421 TGGCGTGCTG CTAGCGCTAT ATGCGTTGAT GCAATTTCTA TGCGCACCCG TTCTCGGAGC
              481 ACTGTCCGAC CGCTTTGGCC GCCGCCCAGT CCTGCTCGCT TCGCTACTTG GAGCCACTAT
              541 CGACTACGCG ATCATGGCGA CCACACCCGT CCTGTGGATC CAGATGAAAA CCTTAGGGGC
              601 TTTAGTCTAA AGCTAAGTGC TGAAAATGAC TTTAGCAGTG ATAGCCCAGA GAGAAAAATG
              661 CTTCCCTGTT ACAGCACAGC AAGAATTCCC CTCCCCAATT TGAATGAGGA CCTAACCTGT
              721 GGAAATCTCC TGATGTGGGA GGCTGTAACT GTACAAACAG AGGTTATTGG AATAACTAGC
              781 ATGCTTAACC TTCATGCAGG GTCACAAAAA GTACATGAGC ATGGTGGAGG GAAGCCTATT
              841 CAAGGCAGTA ATTTCCACTT CTTTGCTGTT GGTGGAGACC CCTTGGAAAT GCAGGGAGTG
              901 CTAATGAATT ACAGGACAAA GTACCCAGAA AGGTACTATA ACTCCAAAAA ACCCAACAGC
              961 CCAGTCCCAG GTAATGAATA CTGACCATAA AGGCCTATTT GGACAAAAAC AATGCTTATC
             1021 CAGTTGAGTG CTGGGATTCC TGATCCCAGT AGAATGAAAA TACTAGGTAT TTGGACTTTG
             1081 ACAGGAGGGG AAAATGTCCC CAGTACCTCA TGTGACACAC AGCTACACAG TGTTGCTAGA
            1141 TGACCAGGTG TGGGCTCTAT GGTAGCTGGA TAGCTGTTAT GTTTTCAGGC TTGCCT
            //
            Primer:
            Sequence file: RDB07258_A3Kjb.seq check
            >07258_07258_A3Kj_pBR322_BamHI_R_H08_23.ab1
                1 CTATGGTATG GGAACATTTC TACCCTTCTG TTATAGCATC TACCCCAGTT TTAACTTCTA
               61 GAACTTCTAC TCCTCCTTTT ATTAGTAGTT TTGGCACTTG CACGGGGTCC TTTGGCTTTT
              121 TGGGAGCTGC CCCTGGACAC TCTCCTTTTC TTTTGGTTGG GGCCATCTTC ATATGCTTCA
              181 AGAGCAGGTG TTACAGTCCC GTACAGGCCT AGAAGTAAAG GCAACATCCA TTGAGGAGCA
              241 GTTCTTTGAT TAGCACCTCC TGGGGCAATA GTTTTTTCTA TAAACTCTCC TGAATGTATA
              301 CTTTGTTGAT TTCTTAAGTC CATTCTTTGT GTAACTTCTT CTATACTGTC AGCATCATCT
              361 ATACTATAAG TATGGCCAAA ATGTACACGG GTACCTTCCC TTTCAGCTAC TTGTCTAACC
              421 ATTGAGGGCC TAATAGGGGA AAGATCAGAA TAATATTCCT GAATATAATT ATAAAAGTTT
              481 ATAGGGGCAT TTACAATTGT CCAGGTAGTT TCCTCCAAAA ATCTAGCCAA GGAGTCTCTA
              541 AAAAATCTTT CTGTTCTTCT TTGTAATTCT TGTGAGGTTA TAGCAGGTAT ATCATCCCTA
              601 ATAACATGCC ACAAAGCCTG GGAAATAGTA GCAAACAAAG AAGGACCCCA ATGCCTAGGA
              661 TCAAGGTATT GAATATTATT TACAAAAGTA TTTACACCAG GGAAACAAAA TATCATAGTA
              721 CTCATCTGGG TTAAACAATT CCAAAGCCAT GCCTGATTGC TGATAGAGGC CTACAGTGGG
              781 AAACTTTGTG ATCCCAATCA CTAAAGAACC TATACCCTAC TTGAGCCAAG GAACTAACAC
              841 CAGTAACAGT TTGAATTAAA GCAGCAAACC CAGCAATAGC CCCAGGAGCA CCAGCAAATT
              901 ACAGCATATG TTTGAGGAGT TAGGCCCTAT AGCAAGCTAT AGCCTCTGAA GGTTACTTTG
              961 TTATGTACCT TCTACAGTAG CAAGGGGATG CAATTTTGAA CTTTCTATAG CAGCAGCAGC
             1021 CTTCCCCAGC AGCAATTTTC AGCCCACCTG AAAATCCCTG TGGCAAGCAG CCAGCTCTCA
             1081 GGATACACCT GGGCCAAACT TAGGTCCCCC CAAAAAGTGC TAGAGCAGCC ACCCAATGAA
             1141 CCCTGGAAAA TACAAACAAA AAAGGGATTA CCTTAACCTA AGGAGTTCTT TTTACAGGAG
            1201 TCTCTTTTAC ACAGCCAAGG TTATAAGACC CAAGTTGTGG CTA
            //

            Please visit Sequencing and PCR primers for primer information.


            References

            Original, user report and related articles

            original Sugimoto, C., Growth efficiency of naturally occurring BK virus variants in vivo and in vitro. J. Virol., 63, 3195-3199 (1989). PMID 2542627.

            2022.02.09

            GNP_filter3_RDBDEP_html_220112.pl