Resource data sheet
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pMT/clone 51

Complete genome of BK virus, lineage Ic

Catalog number RDB07258
Resource name pMT/clone 51
Clone info. Complete genome of BK virus, lineage Ic. BKV genomic DNA derived from the urine of a Japanese systemic lupus eryhtematosus patient.
Vector backbone pBR322 (Plasmid)
Size of vector backbone 4.3 kb
Selectable markers Amp^r
Gene/insert name Hum_Polyoma BKV genomic DNA
Reference of nucleotide sequence AB485704 (DDBJ accession number)
Depositor Yogo, Yoshiaki |

Distribution information

Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
Terms and conditions set forth by the DEPOSITOR In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature(s) designated by the DEPOSITOR is requested (J. Virol., 63, 3195-3199 (1989)).
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RDB07258 pMT/clone 51 DNA solution

Ordering Information [in Japanese] [in English]

References and tips

Electronic file

Featured content

References

original Sugimoto, C., Growth efficiency of naturally occurring BK virus variants in vivo and in vitro. J. Virol., 63, 3195-3199 (1989). PMID 2542627.

User reports and related articles (go to bottom)


Sequence information

RIKEN BRC has sequenced portions of this material for quality test. Primers and the results are shown below.

Data are summerized on test sheet below.

Test sheet RDB07258_A3Kj.pdf

Nucleotide sequence of a portion of this resource (if available).

Primer: RDB07258_A3Kja.seq
>07258_07258_A3Kj_1_Amp_R_B12_06.ab1
    1 TCCATTTTCA TATTATTGAG CATTTATCAG GGTTATTGTC TCATGAGCGG ATACATATTT
   61 GAATGTATTT AGAAAAATAA ACAAATAGGG GTTCCGCGCA CATTTCCCCG AAAAGTGCCA
  121 CCTGACGTCT AAGAAACCAT TATTATCATG ACATTAACCT ATAAAAATAG GCGTATCACG
  181 AGGCCCTTTC GTCTTCAAGA ATTCTCATGT TTGACAGCTT ATCATCGATA AGCTTTAATG
  241 CGGTAGTTTA TCACAGTTAA ATTGCTAACG CAGTCAGGCA CCGTGTATGA AATCTAACAA
  301 TGCGCTCATC GTCATCCTCG GCACCGTCAC CCTGGATGCT GTAGGCATAG GCTTGGTTAT
  361 GCCGGTACTG CCGGGCCTCT TGCGGGATAT CGTCCATTCC GACAGCATCG CCAGTCACTA
  421 TGGCGTGCTG CTAGCGCTAT ATGCGTTGAT GCAATTTCTA TGCGCACCCG TTCTCGGAGC
  481 ACTGTCCGAC CGCTTTGGCC GCCGCCCAGT CCTGCTCGCT TCGCTACTTG GAGCCACTAT
  541 CGACTACGCG ATCATGGCGA CCACACCCGT CCTGTGGATC CAGATGAAAA CCTTAGGGGC
  601 TTTAGTCTAA AGCTAAGTGC TGAAAATGAC TTTAGCAGTG ATAGCCCAGA GAGAAAAATG
  661 CTTCCCTGTT ACAGCACAGC AAGAATTCCC CTCCCCAATT TGAATGAGGA CCTAACCTGT
  721 GGAAATCTCC TGATGTGGGA GGCTGTAACT GTACAAACAG AGGTTATTGG AATAACTAGC
  781 ATGCTTAACC TTCATGCAGG GTCACAAAAA GTACATGAGC ATGGTGGAGG GAAGCCTATT
  841 CAAGGCAGTA ATTTCCACTT CTTTGCTGTT GGTGGAGACC CCTTGGAAAT GCAGGGAGTG
  901 CTAATGAATT ACAGGACAAA GTACCCAGAA AGGTACTATA ACTCCAAAAA ACCCAACAGC
  961 CCAGTCCCAG GTAATGAATA CTGACCATAA AGGCCTATTT GGACAAAAAC AATGCTTATC
 1021 CAGTTGAGTG CTGGGATTCC TGATCCCAGT AGAATGAAAA TACTAGGTAT TTGGACTTTG
 1081 ACAGGAGGGG AAAATGTCCC CAGTACCTCA TGTGACACAC AGCTACACAG TGTTGCTAGA
1141 TGACCAGGTG TGGGCTCTAT GGTAGCTGGA TAGCTGTTAT GTTTTCAGGC TTGCCT
//
Primer: RDB07258_A3Kjb.seq
>07258_07258_A3Kj_pBR322_BamHI_R_H08_23.ab1
    1 CTATGGTATG GGAACATTTC TACCCTTCTG TTATAGCATC TACCCCAGTT TTAACTTCTA
   61 GAACTTCTAC TCCTCCTTTT ATTAGTAGTT TTGGCACTTG CACGGGGTCC TTTGGCTTTT
  121 TGGGAGCTGC CCCTGGACAC TCTCCTTTTC TTTTGGTTGG GGCCATCTTC ATATGCTTCA
  181 AGAGCAGGTG TTACAGTCCC GTACAGGCCT AGAAGTAAAG GCAACATCCA TTGAGGAGCA
  241 GTTCTTTGAT TAGCACCTCC TGGGGCAATA GTTTTTTCTA TAAACTCTCC TGAATGTATA
  301 CTTTGTTGAT TTCTTAAGTC CATTCTTTGT GTAACTTCTT CTATACTGTC AGCATCATCT
  361 ATACTATAAG TATGGCCAAA ATGTACACGG GTACCTTCCC TTTCAGCTAC TTGTCTAACC
  421 ATTGAGGGCC TAATAGGGGA AAGATCAGAA TAATATTCCT GAATATAATT ATAAAAGTTT
  481 ATAGGGGCAT TTACAATTGT CCAGGTAGTT TCCTCCAAAA ATCTAGCCAA GGAGTCTCTA
  541 AAAAATCTTT CTGTTCTTCT TTGTAATTCT TGTGAGGTTA TAGCAGGTAT ATCATCCCTA
  601 ATAACATGCC ACAAAGCCTG GGAAATAGTA GCAAACAAAG AAGGACCCCA ATGCCTAGGA
  661 TCAAGGTATT GAATATTATT TACAAAAGTA TTTACACCAG GGAAACAAAA TATCATAGTA
  721 CTCATCTGGG TTAAACAATT CCAAAGCCAT GCCTGATTGC TGATAGAGGC CTACAGTGGG
  781 AAACTTTGTG ATCCCAATCA CTAAAGAACC TATACCCTAC TTGAGCCAAG GAACTAACAC
  841 CAGTAACAGT TTGAATTAAA GCAGCAAACC CAGCAATAGC CCCAGGAGCA CCAGCAAATT
  901 ACAGCATATG TTTGAGGAGT TAGGCCCTAT AGCAAGCTAT AGCCTCTGAA GGTTACTTTG
  961 TTATGTACCT TCTACAGTAG CAAGGGGATG CAATTTTGAA CTTTCTATAG CAGCAGCAGC
 1021 CTTCCCCAGC AGCAATTTTC AGCCCACCTG AAAATCCCTG TGGCAAGCAG CCAGCTCTCA
 1081 GGATACACCT GGGCCAAACT TAGGTCCCCC CAAAAAGTGC TAGAGCAGCC ACCCAATGAA
 1141 CCCTGGAAAA TACAAACAAA AAAGGGATTA CCTTAACCTA AGGAGTTCTT TTTACAGGAG
1201 TCTCTTTTAC ACAGCCAAGG TTATAAGACC CAAGTTGTGG CTA
//

Please visit Sequencing and PCR primers for primer information.


References

References

original Sugimoto, C., Growth efficiency of naturally occurring BK virus variants in vivo and in vitro. J. Virol., 63, 3195-3199 (1989). PMID 2542627.

2018.12.10

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