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pMT/cl 108

Complete genome of BK virus, lineage Ic

Catalog number RDB07257
Resource name pMT/cl 108
Clone info. Complete genome of BK virus, lineage Ic. BKV genomic DNA derived from the urine of a Japanese systemic lupus erythematosus patient.
Vector backbone pBR322 (Plasmid)
Size of vector backbone 4.3 kb
Selectable markers Amp^r
Gene/insert name Hum_Polyoma BKV genomic DNA
Reference of insert sequence AB485711 (DDBJ accession number)
Depositor|Developer Yogo, Yoshiaki |
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External Database
Hum_Polyoma BKV

            Reference sequence
              

            Distribution information

            Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
            Terms and conditions set forth by the DEPOSITOR In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature(s) designated by the DEPOSITOR is requested (J. Virol., 63, 3195-3199 (1989)).
            Ordering Please visit Information of Request for Distribution.[link] 
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            Material Transfer Agreement (MTA for use for not-for-profit academic purpose) [Word]
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            提供条件 利用者は、研究成果の公表にあたって寄託者の指定する文献を引用する (J. Virol., 63, 3195-3199 (1989))。
            提供依頼 手続きの詳細は、「提供申込みについて[link]」をご覧ください。
            提供依頼書 [Word]
            提供同意書 (MTA、非営利機関による非営利学術研究用)[Word]

            Catalog # Resource name Shipping form Fee (non-profit org.)
            RDB07257 pMT/cl 108 DNA solution

            Ordering Information [in Japanese] [in English]
            Please review the QC test results indicated by check icon below as well as clone information before placing your order.

            References and tips

            Electronic file

            Original reference

            original Sugimoto, C., Growth efficiency of naturally occurring BK virus variants in vivo and in vitro. J. Virol., 63, 3195-3199 (1989). PMID 2542627.

            Further references such as user reports and related articles (go to bottom)

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            Sequence information

            RIKEN BRC has sequenced portions of this material for quality test.
            Please review the QC test results indicated by check icon as well as clone information before placing your order.

            Test sheet RDB07257_A3Kj.pdf check

            Nucleotide sequence of a portion of this resource (if available).

            Primer:
            Sequence file: RDB07257_A3Kja.seq check
            >07257_07257_A3Kj_2_Amp_R_H11_23.ab1
                1 CTTCGTTTTC ATATTATTGA AGCATTTATC AGGGTTATTG TCTCATGAGC GGATACATAT
               61 TTGAATGTAT TTAGAAAAAT AAACAAATAG GGGTTCCGCG CACATTTCCC CGAAAAGTGC
              121 CACCTGACGT CTAAGAAACC ATTATTATCA TGACATTAAC CTATAAAAAT AGGCGTATCA
              181 CGAGGCCCTT TCGTCTTCAA GAATTCTCAT GTTTGACAGC TTATCATCGA TAAGCTTTAA
              241 TGCGGTAGTT TATCACAGTT AAATTGCTAA CGCAGTCAGG CACCGTGTAT GAAATCTAAC
              301 AATGCGCTCA TCGTCATCCT CGGCACCGTC ACCCTGGATG CTGTAGGCAT AGGCTTGGTT
              361 ATGCCGGTAC TGCCGGGCCT CTTGCGGGAT ATCGTCCATT CCGACAGCAT CGCCAGTCAC
              421 TATGGCGTGC TGCTAGCGCT ATATGCGTTG ATGCAATTTC TATGCGCACC CGTTCTCGGA
              481 GCACTGTCCG ACCGCTTTGG CCGCCGCCCA GTCCTGCTCG CTTCGCTACT TGGAGCCACT
              541 ATCGACTACG CGATCATGGC GACCACACCC GTCCTGTGGA TCCAGATGAA AACCTTAGGG
              601 GCTTTAGTCT AAAGCTAAGT GCTGAAAATG ACTTTAGCAG TGATAGCCCA GAGAGAAAAA
              661 TGCTTCCCTG TTACAGCACA GCAAGAATTC CCCTCCCCAA TTTGAATGAG GACCTAACCT
              721 GTGGAAATCT CCTGATGTGG GAGGCTGTAA CTGTACAAAC AGAGGTTATT GGAATAACTA
              781 GCATGCTTAA CCTTCATGCA GGGTCACAAA AAGTACATGA GCATGGTGGA GGGAAGCCTA
              841 TTCAAGGCAG TAATTTCCAC TTCTTTGCTG TTGGTGGAGA CCCCTTGGAA ATGCAGGGAG
              901 TGCTAATGAA TTACAGGACA AAGTACCCAG AAGGTACTAT AACTCCAAAA AACCCAACAG
              961 CCCAGTCCCA GGTAATGAAT ACTGACCATA AAGGCCTATT TGGACAAAAC AATGCTTATC
             1021 CAGTTGAGTG CTGGATTCCT GATCCCAGTA GAAATGAAAT ACTAGGTATT TGGGACTTTG
             1081 ACAGGAGGGA AAATGTCCCC AGTACTCATG TGACACACAG CTACACAGTG TTGCTAGATG
            1141 ACAGGTGGTG GGCTCATGTA GCTGATAGCT GTATTGTTTC AGCTGCCTGG TA
            //
            Primer:
            Sequence file: RDB07257_A3Kjb.seq check
            >07257_07257_A3Kj_pBR322_BamHI_R_G08_20.ab1
                1 CCTAAAGTTA GGAGCAATTC TACCTCTGTT ATAGCATCTA CCCCAGTTTT AACTTCTAGA
               61 ACTTCTACTC CTCCTTTTAT TAGTAGTTTT GGCACTTGCA CGGGGTCCTT TGGCTTTTTG
              121 GGAGCTGCCC CTGGACACTC TCCTTTTCTT TTGGTTGGGG CCATCTTCAT ATGCTTCAAG
              181 AGCAGGTGTT ACAGTCCCGT ACAGGCCTAG AAGTAAAGGC AACATCCATT GAGGAGCAGT
              241 TCTTTGATTA GCACCTCCTG GGGCAATAGT TTTTTCTATA AACTCTCCTG AATGTATACT
              301 TTGTTGATTT CTTAAGTCCA TTCTTTGTGT AACTTCTTCT ATACTGTCAG CATCATCTAT
              361 ACTATAAGTA TGGCCAAAAT GTACACGGGT ACCTTCCCTT TCAGCTACTT GTCTAACCAT
              421 TGAGGGCCTA ATAGGGGAAA GATCAGAATA ATATTCCTGA ATATAATTAT AAAAGTTTAT
              481 AGGGGCATTT ACAATTGTCC AGGTAGTTTC CTCCAAAAAT CTAGCCAAGG AGTCTCTAAA
              541 AAATCTTTCT GTTCTTCTTT GTAATTCTTG TGAGGTTATA GCAGGTATAT CATCCCTAAT
              601 AACATGCCAC AAAGCCTGGG AAATAGTAGC AAACAAAGAA GGACCCCAAT GCCTAGGATC
              661 AAGGTATTGA ATATTATTTA CAAAAGTATT TACACCAGGA AACAAAATAT CATAGTACTC
              721 ATCTGGGTTA AACAATTCCA AAGCCATGCC TGATTGCTGA TAGAGGCCTA CAGTGGAAAC
              781 TTTGTGATCC CAATCACTAA AGAACCTATA CCCTACTTGA GCCAAGGAAC TAACACCAGT
              841 AACAGTTTGA ATTAAAGCAG CAAACCCAGC AATAGCCCCA GGAGCACCAG CAATTACAGC
              901 ATATGTTTGA GGAGTTAGGC CTATAGCAGC TATAGCCTCT GAGGTACTTG TTATGCCCTC
              961 TACAGTAGCA AGGGATGCAA TTTGAACTTC TATAGCAGCA GCAGCCTCCC CAGCAGCAAT
             1021 TTCAGCCACT GAAAATCTGT GGCAGGCAGC AGCCTCAGAT TACACTGGCA ACTAGGTCCC
             1081 CCAAAAGTTG CTAGAGCAGC ACCATGACTT GGAAATACCA AAAAAAGGAA TACTACCTTA
             1141 GAGTTCTTTT ACGAGTTCTT TTAACAGGCA AGTAGCATGG TACTTTTGGT TTTTTCCGTA
            1201 TCTCT
            //

            Please visit Sequencing and PCR primers for primer information.


            References

            Original, user report and related articles

            original Sugimoto, C., Growth efficiency of naturally occurring BK virus variants in vivo and in vitro. J. Virol., 63, 3195-3199 (1989). PMID 2542627.

            2022.02.09

            GNP_filter3_RDBDEP_html_220112.pl