Resource data sheet
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pMT/cl 8

Complete genome of BK virus, lineage Ic

Catalog number RDB07256
Resource name pMT/cl 8
Clone info. Complete genome of BK virus, lineage Ic. BKV genomic DNA derived from the urine of a Japanese systemic lupus eryhtematosus patient.
Vector backbone pBR322 (Plasmid)
Size of vector backbone 4.3 kb
Selectable markers Amp^r
Gene/insert name Hum_Polyoma BKV genomic DNA
Reference of nucleotide sequence AB485696 (DDBJ accession number)
Depositor Yogo, Yoshiaki |

Distribution information

Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
Terms and conditions set forth by the DEPOSITOR In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature(s) designated by the DEPOSITOR is requested (J. Virol., 63, 3195-3199 (1989)).
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RDB07256 pMT/cl 8 DNA solution

Ordering Information [in Japanese] [in English]

References and tips

Electronic file

Featured content

References

original Sugimoto, C., Growth efficiency of naturally occurring BK virus variants in vivo and in vitro. J. Virol., 63, 3195-3199 (1989). PMID 2542627.

User reports and related articles (go to bottom)


Sequence information

RIKEN BRC has sequenced portions of this material for quality test. Primers and the results are shown below.

Data are summerized on test sheet below.

Test sheet RDB07256_A3Kj.pdf

Nucleotide sequence of a portion of this resource (if available).

Primer: RDB07256_A3Kja.seq
>07256_07256_A3Kj_2_Amp_R_E11_14.ab1
    1 GCCTCTTTTT TAATAATTAT TGAAGCATTT ATCAGGGTTA TTGTCTCATG AGCGGATACA
   61 TATTTGAATG TATTTAGAAA AATAAACAAA TAGGGGTTCC GCGCACATTT CCCCGAAAAG
  121 TGCCACCTGA CGTCTAAGAA ACCATTATTA TCATGACATT AACCTATAAA AATAGGCGTA
  181 TCACGAGGCC CTTTCGTCTT CAAGAATTCT CATGTTTGAC AGCTTATCAT CGATAAGCTT
  241 TAATGCGGTA GTTTATCACA GTTAAATTGC TAACGCAGTC AGGCACCGTG TATGAAATCT
  301 AACAATGCGC TCATCGTCAT CCTCGGCACC GTCACCCTGG ATGCTGTAGG CATAGGCTTG
  361 GTTATGCCGG TACTGCCGGG CCTCTTGCGG GATATCGTCC ATTCCGACAG CATCGCCAGT
  421 CACTATGGCG TGCTGCTAGC GCTATATGCG TTGATGCAAT TTCTATGCGC ACCCGTTCTC
  481 GGAGCACTGT CCGACCGCTT TGGCCGCCGC CCAGTCCTGC TCGCTTCGCT ACTTGGAGCC
  541 ACTATCGACT ACGCGATCAT GGCGACCACA CCCGTCCTGT GGATCCCCCA TTTCTGGGTT
  601 TAGGAAGCAT TCTACCTCTG TTATAGCATC TACCCCAGTT TTAACTTCTA GAACTTCTAC
  661 TCCTCCTTTT ATTAGTAGTT TTGGCACTTG CACGGGGTCC TTTGGCTTTT TGGGAGCTGC
  721 CCCTGGACAC TCTCCTTTTC TTTTGGTTGG GGCCATCTTC ATATGCTTCA AGAGCAGGTG
  781 TTACAGTCCC GTACAGGCCT AGAAGTAAAG GCAACATCCA TTGAGGAGCA GTTCTTTGAT
  841 TAGCACCTCC TGGGGCAATA GTTTTTTCTA TAAACTCTCC TGAATGTATA CTTTGTTGAT
  901 TTCTTAAGTC CATTCTTTGT GTAACTTCTT CTATACTGTC AGCATCATCT ATACTATAAG
  961 TATGGCCAAA ATGTACACGG GTACCTTCCC TTTCAGCTAC TTGTCTAACC ATTGAGGGCC
 1021 TAATAGGGAA AGATCAGAAA TAATATTTCT GAATATAATT ATAAAGTTTA TAGGGCATTT
 1081 ACATTGTCCA GGGTAGTTTC CTCCAAATCT AAGCCCAAGG AGTCTCTAAA AATCCTTTCT
1141 GTTCTTCTTG TAATTCCTGT GAGTTAATAG GCAAGGTATA TAATTCAATT CCCCCTTAT
//
Primer: RDB07256_A3Kjb.seq
>07256_07256_A3Kj_pBR322_BamHI_R_F08_17.ab1
    1 ACTTGAAGGG GCCCTTTAGT CTAAGCTAAG TGCTGAAATG ACTTTAGCAG TGATAGCCCA
   61 GAGAGAAAAA TGCTTCCCTG TTACAGCACA GCAAGAATTC CCCTCCCCAA TTTGAATGAG
  121 GACCTAACCT GTGGAAATCT CCTGATGTGG GAGGCTGTAA CTGTACAAAC AGAGGTTATT
  181 GGAATAACTA GCATGCTTAA CCTTCATGCA GGGTCACAAA AAGTACATGA GCATGGTGGA
  241 GGGAAGCCTA TTCAAGGCAG TAATTTCCAC TTCTTTGCTG TTGGTGGAGA CCCCTTGGAA
  301 ATGCAGGGAG TGCTAATGAA TTACAGGACA AAGTACCCAG AAGGTACTAT AACTCCAAAA
  361 AACCCAACAG CCCAGTCCCA GGTAATGAAT ACTGACCATA AGGCCTATTT GGACAAAAAC
  421 AATGCTTATC CAGTTGAGTG CTGGATTCCT GATCCCAGTA GAAATGAAAA TACTAGGTAT
  481 TTTGGGACTT TGACAGGAGG GGAAAATGTT CCCCCAGTAC TTCATGTGAC CAACACAGCT
  541 ACCACAGTGT TGCTAGATGA ACAGGGTGTG GGGCCTCTTT GTAAAGCTGA TAGCCTGTAT
  601 GTTTCAGCTG CTGATATTTG TGGCCTGTTT ACTAACAGCT CTGGAACACA ACAGTGGAGA
  661 GGCCTTGCAA GATATTTTAA GATTCGCCTG AGAAAAAGAT CTGTAAAGAA TCCTTACCCA
  721 ATTTCCTTTT TGCTGAGTGA CCTTATAAAC AGGAGAACCC AGAGAGTGGA TGGGCAGCCT
  781 ATGTATGGTA TGGAATCCCA GGTAGAAGAG GTCAGGGTGT TTGATGGCAC AGAAAAACTT
  841 CCAGGGGACC CAGATATGAT AAGATATATT GACAAACAAG GACAATTGCA AACCAAAATG
  901 CTTTAAACAG GTGCTTTTAT TGTACATATA CATTTAATAA AATGCTGCTT TTGTATAAGC
  961 CACTTTTAAG CTTGTGTTAT TTTGGGGGTG GTGTTTTAGG CCTTTTAAAC ACTGGAAGCC
 1021 TTTACACAAA TGCAACTCTT GACTATGGGG GGTCTGACCT TTGGGAATCT TCAGCAGGGG
 1081 CTGAAGTATC TGAGAACTTG GAAGAGCAAT TTGTGAATGG GAATCCAGTT GCCTGATTCA
1141 ATGGTCAGAG TCTTCCAGAT TCTTGCAATC CTTTCTCTTC TTCGTTGTG
//

Please visit Sequencing and PCR primers for primer information.


References

References

original Sugimoto, C., Growth efficiency of naturally occurring BK virus variants in vivo and in vitro. J. Virol., 63, 3195-3199 (1989). PMID 2542627.

2018.12.10

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