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pTky-2a

Complete genome of JC virus, PML-type

Catalog number RDB07253
Resource name pTky-2a
Clone info. Complete genome of JC virus, PML-type. JCV genomic DNA derived from the brain of a Japanese PML patient.
Vector backbone pUC19 (Plasmid)
Size of vector backbone 2,690 bp
Selectable markers Amp^r
Gene/insert name Hum_Polyoma JCV genomic DNA
Reference of insert sequence AB038255 (DDBJ accession number)
Depositor|Developer Yogo, Yoshiaki |
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External Database
Hum_Polyoma JCV

            Reference sequence
              
             

            Distribution information

            Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
            Terms and conditions for distribution In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature(s) designated by the DEPOSITOR is requested (Jpn. J. Med. Sci. Biol., 47, 167-178 (1994)).
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            Please visit Information of Request for Distribution.[link] For for-profit-research purpose, please contact us. 
            提供案内 (日本国内) [open/close]

            提供条件 利用者は、研究成果の公表にあたって寄託者の指定する文献を引用する (Jpn. J. Med. Sci. Biol., 47, 167-178 (1994))。
            提供依頼
            提供依頼書 [Word]
            提供同意書 (MTA、非営利機関による非営利学術研究用)[Word]
            手続きの概要は、「提供申込みについて[link]」をご覧ください。営利目的利用についてはお問い合わせください。

            Catalog # Resource name Shipping form Fee (non-profit org.)
            RDB07253 pTky-2a DNA solution

            Please review the QC test results indicated by check icon below as well as clone information before placing your order.

            How to cite this biological resource

            Materials & Methods section:

            The pTky-2a was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan (cat. RDB07253).

            Reference section:

            Kato, K., Guo, J., Taguchi, F., Daimaru, O., Tajima, M., Haibara, H., Matsuda, J., Sumiya, M., Yogo, Y., Phylogenetic comparison between archetypal and disease-associated JC virus isolates in Japan. Jpn. J. Med. Sci. Biol., 47, 167-178 (1994). PMID 7823412. [link to RRC of NBRP]

            Further references such as user reports and related articles (go to bottom)


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            QC test results

            RIKEN BRC has sequenced portions of this material for quality test.
            Please review the QC test results indicated by check icon as well as clone information before placing your order.

            Test sheet RDB07253_A9F3p1-1.pdf check

            Nucleotide sequence of a portion of this resource (if available).

            Primer: pUC-CAPbs_up_F ()
            Sequence file: RDB07253_A9F3a.seq check
            >07253_07253_A9F3_2_pUC-CAPbs_up_F_G04_19_ABI24.ab1
                1 TAACGGGGGC AGTGAGCGCA CGCAATTAAT GTGAGTTAGC TCACTCATTA GGCACCCCAG
               61 GCTTTACACT TTATGCTTCC GGCTCGTATG TTGTGTGGAA TTGTGAGCGG ATAACAATTT
              121 CACACAGGAA ACAGCTATGA CCATGATTAC GCCAAGCTTG CATGCCTGCA GGTCGACTCT
              181 AGAGGATCCT GTGTTTTCAT CATCACTGGC AAACATTTCT TCATGGCAAA ACAGGTCTTC
              241 ATCCCACTTC TCATTAAATG TATTCCACCA GGATTCCCAC TCATCTGTTC CATAGGTTGG
              301 CACCTAAAAA CAAAAAATTC AGTTTATGTA AAAAACAAAA TGCCCTGCAA AAGAAAAATT
              361 GTGGTTTACC TTAAAGCTTT AGATCCCTGT AGGGAGTGTC TCCAAGAACC TTCTCCCAGC
              421 AATGAAGAGC TTCTTGGGTT AAGTCACACC CAAACCATTG TCTGAAGCAA TCAAAGCAAT
              481 AGCAATCTAT CCACACAAGT GGGCTGCTTC TTAAAAATTT TCTGTTTCTA TGCCTTAATT
              541 TTAGCATGCA CATTAAACAG GGGCAATGCA CTGAAGGATT AGTGGCACAA TTAGGCCATT
              601 CCTTGCAATA AAGAGTATCA GAATTAGGAG GAAAATCACA ACCAACCTCT GAACTATTCC
              661 ATGTACCAAA ATCAGGCTGA TGAGCAACTT TTACACCTTG TTCCATTTTT TTATATAAAA
              721 AGTTCATTCT CTTCATTTTG TCTTCGTCCC CACCTTTATC AGGGTGAAGT TCTTTGCATT
              781 TTTTCAGATA AGCTTTTCTC ATGACAGGAA TGTTTCCCCA TGCAGATCTA TCAAGGCCTA
              841 ATAAATCCAT GAGCTCCATG GATTCCTCCC TATTCAGCAC TTTGTCCATT TTTTGCTTTT
              901 TGTAGCAAAA AATTAGTGCA AAAAAGGGAA AAACAAGGGA ATTTCCCTGG GCCTCCTAAA
              961 AAGCCTCCAC GCCCTTACTA CTTCTGAGTA AGCTTGGGAG GCGGAGGCGG CCTCGGCCTC
             1021 CTGTATATAT AAAAAAAAGG AATGTAGGGA GGAGCTGGGC CTAAAACTGC ATGCCTGCAG
             1081 CCAAGCATGA AGCTTCATAC TTACGGAGAC TGATCAAGCC TGGACCAGTT CACCAAGGTG
            1141 AAC
            //
            Primer: pUC-M13_-100 ()
            Sequence file: RDB07253_A9F3b.seq check
            >07253_07253_A9F3_2_pUC-M13_-100_H04_22_ABI24.ab1
                1 GGGGTCAGCG GATTAGTTGG GTACGCCAGG GTTTTCCCAG TCACGACGTT GTAAAACGAC
               61 GGCCAGTGAA TTCGAGCTCG GTACCCGGGG ATCCCAACAC TCTACCCCAC CTAAGAAGAA
              121 AAAAAAGGTA GAAGACCCTA AAGACTTTCC TGTAGATCTG CATGCATTCC TCAGTCAAGC
              181 TGTGTTTAGT AATAGAACTG TTGCTTCTTT TGCTGTGTAT ACCACTAAAG AAAAAGCTCA
              241 AATTTTATAT AAGAAACTTA TGGAAAAATA TTCTGTAACC TTTATAAGTA GACATGGTTT
              301 TGGGGGTCAT AATATTTTGT TTTTTTTAAC ACCACATAGA CATAGAGTTT CAGCAATTAA
              361 TAATTACTGT CAGAAACTAT GTACCTTTAG TTTTTTAATT TGTAAAGGTG TGAATAAGGA
              421 ATACTTGTTT TACAGTGCCT TGTGTAGACA GCCATATGCA GTAGTGGAAG AAAGTATTCA
              481 GGGGGGCCTT AAGGAGCATG ACTTTAACCC AGAAGAACCA GAAGAAACTA AGCAGGTTTC
              541 ATGGAAATTA GTTACACAGT ATGCTTTGGA CACCAAGTGT GAGGATGTTT TCTTGCTTAT
              601 GGGCATGTAC TTAGACTTTC AGGAAAACCC ACTGCAATGC AAAAAATGTG AAAAGAAGGA
              661 TCAGCCAAAT CACTTTAACC ATCATGAAAA GCACTATTAT AATGCCCAAA TTTTTGCAGA
              721 TAGCAAAAAT CAAAAAAGCA TTTGCCAGCA GGCTGTTGAT ACTGTAGCAG CCAAACAAAG
              781 GGTTGACAGT CTCCATATGA CCAGAGAAGA AAATGTTAGT TGAAAGGTTT AATTTTTTGC
              841 TTGATAAAAT GGACCTTAAT TTTTGGGGGC ACATGGGCAA TGCTGTTTTA GAGCAATATA
              901 TGGCTGGGGT GGCCTGGATT CATTGTTTTG CTGCCTCAAA TGGACACAAG TCAAATATGA
              961 GTTCTTAAAA TGCATTGTAT TAAAACATTT CCAAAAAAAA GGTACTGGCT ATTCAAAGGG
             1021 GCCAAATAGA CAGTGGCAAA AACTACCTTT AGCTGCAGCC TTTACTTGGA TCTCTGTGGG
             1081 GGGAAAGTTC AATTAAATGG TAATAATGCC CATTTAAGAA AGATTAACTT TGAGTAGGAG
            1141 GTGGGGGTTA ATAGAATCCA CTTCATATGG TGGTGATATG ACTGACGCAC G
            //
            Primer: JCsp_f1 ()
            Sequence file: RDB07253_A9F3c.seq check
            >07253_07253_A9F3_2_JCsp_f1_D01_10_ABI24.ab1
                1 GCCTTGAGCA TATGAGATGG CCCCAACAAA AAGAAAAGGA GAAAGGAAGG ACCCCGTGCA
               61 AGTTCCAAAA CTTCTTATAA GAGGAGGAGT AGAAGTTCTA GAAGTTAAAA CTGGGGTTGA
              121 CTCAATTACA GAGGTAGAAT GTTTTTTAAC TCCAGAAATG GGTGACCCAG ATGAGCATCT
              181 TAGGGGTTTT AGTAAGTCAA TTTCTATATC AGATACATTT GAAAGTGACT CCCCAAATAA
              241 GGACATGCTT CCTTGTTACA GTGTGGCCAG AATTCCACTA CCCAATCTAA ATGAGGATCT
              301 AACCTGTGGA AATATACTAA TGTGGGAGGC TGTGACCTTA AAAACTGAGG TTATAGGGGT
              361 AACAACTTTG ATGAATGTGC ACTCTAATGG TCAAGCAACT CATGACAATG GTGCAGGAAA
              421 GCCAGTGCAG GGCACCAGCT TTCATTTTTT TTCTGTTGGG GGGGAGGCTT TAGAATTACA
              481 GGGGGTGGTT TTTAACTACA GAACAAAGTA CCCAGATGGA ACAATTTTTC CAAAGAATGC
              541 AACAGTGCAA TCTCAAGTAA TGAACACAGA GCACAAGGCG TACCTAGATA AGAACAAAGC
              601 ATATCCTGTT GAATGTTGGG TTCCTGATCC CACCAGAAAT GAAAACACAA GATATTTTGG
              661 GACACTAACA GGAGGAGAAA ATGTTCCTCC AGTTCTTCAT ATAACAAACA CTGCCACAAC
              721 AGTGCTGCTT GATGAATTTG GTGTTGGGCC ACTTTGCAAA GGTGACAACT TGTATTTGTC
              781 AGCTGTGGAT GTTTGTGGCA TGTTTACTAA CAGATCTGGT TACCAGCAGT GGAGAGGACT
              841 GTCCAGATAT TTTAAGGTTC AGCTAAGAAA AAGGAGGGTT AAAAACCCCT ACCCAATTTC
              901 TTTCCTTCTT ACTGATTTAA TTAACAGAAG GACCCCTAGA GTTGATGGGC AGCCTATGTA
              961 TGGCATGGAT GCTCAGGTAG AGGAGGTTAG AGTTTTTTGA GGGGACAGAG GAAACTTCCA
             1021 GGGGACCCAG ACATGATGAG ATATGTTGAC AGATATGGGA CAGTTTGCAG ACCAAGATGC
             1081 TTGTTAATCA AAAGCCCGTT TAATGGTATA TGGCAGGTAC ATTTTCATAA GTATATCAGC
            1141 TTACTTGATC AGTGGCCAAG GTTTAACCT
            //
            Primer: JCsp_R2 ()
            Sequence file: RDB07253_A9F3d.seq check
            >07253_07253_A9F3_2_JCsp_R2_D03_12_ABI24.ab1
                1 CCGTCCAGTA AGCTGGTTAT ACTTTATTAA AATGTACTGC ATATTACAAT AAAGGCTTTT
               61 GATTACAGCA TCTTTGTCTG CAACTGTCCA TATCTGTCAA CATATCTCAT CATGTCTGGG
              121 TCCCCTGGAA GTTCCTCTGT CCCCTCAAAA ACTCTAACCT CCTCTACCTG AGCATCCATG
              181 CCATACATAG GCTGCCCATC AACTCTAGGG GTCCTTCTGT TAATTAAATC AGTAAGAAGG
              241 AAAGAAATTG GGTAGGGGTT TTTAACCCTC CTTTTTCTTA GCTGAACCTT AAAATATCTG
              301 GACAGTCCTC TCCACTGCTG GTAACCAGAT CTGTTAGTAA ACATGCCACA AACATCCACA
              361 GCTGACAAAT ACAAGTTGTC ACCTTTGCAA AGTGGCCCAA CACCAAATTC ATCAAGCAGC
              421 ACTGTTGTGG CAGTGTTTGT TATATGAAGA ACTGGAGGAA CATTTTCTCC TCCTGTTAGT
              481 GTCCCAAAAT ATCTTGTGTT TTCATTTCTG GTGGGATCAG GAACCCAACA TTCAACAGGA
              541 TATGCTTTGT TCTTATCTAG GTACGCCTTG TGCTCTGTGT TCATTACTTG AGATTGCACT
              601 GTTGCATTCT TTGGAAAAAT TGTTCCATCT GGGTACTTTG TTCTGTAGTT AAAAACCACC
              661 CCCTGTAATT CTAAAGCCTC CCCCCCAACA GAAAAAAAAT GAAAGCTGGT GCCCTGCACT
              721 GGCTTTCCTG CACCATTGTC ATGAGTTGCT TGACCATTAG AGTGCACATT CATCAAAGTT
              781 GTTACCCCTA TAACCTCAGT TTTTAAGGTC ACAGCCTCCC ACATTAGTAT ATTTCCACAG
              841 GTTAGATCCT CATTTAGATT GGGTAGTGGA ATTCTGGCCA CACTGTAACA AGGAAGCATG
              901 TCCTTATTTG GGGAGTCACT TTCAAATGTA TCTGATATAG AAATTGACTT ACTAAAACCC
              961 CTAAGATGCT CATCTGGGTC ACCCATTTCT GGGAGTTTAA AAAAACATTT CTACCTCTGT
             1021 AAATTTGAGT CAACCCCAGT TTTAACTTCT AGAACTTCTA CTCTTCTTCT ATAGAGTTTT
            1081 GGAACTGCAC GGATCGTCGT TTCTCATTTT CGTTTTTGAT TGGGGGCA
            //
            Primer: JCsp_f4 ()
            Sequence file: RDB07253_A9F3e.seq check
            >07253_07253_A9F3_2_JCsp_f4_H01_22_ABI24.ab1
                1 GCCTCATGGG ATTCTCCTAT TCAGCACTTT GTCCATTTTT GCTTTTTGTA GCAAAAAATT
               61 AGTGCAAAAA AGGGAAAAAC AAGGGAATTT CCCTGGCCTC CTAAAAAGCC TCCACGCCCT
              121 TACTACTTCT GAGTAAGCTT GGAGGCGGAG GCGGCCTCGG CCTCCTGTAT ATATAAAAAA
              181 AAGGGAAGGT AGGGAGGAGC TGGCTAAAAC TGGATGGCTG CCAGCCAAGC ATGAGCTCAT
              241 ACCTAGGGAG CCAACCAGCT GACAGTCACA AGTAAACAAA GCACAAGGCT AAAACTGGAT
              301 GGCTGCCAGC CAAGCATGAG CTCATACCTA GGGAGCCAAC CAGCTGACAG TCACAAGTAA
              361 ACAAAGCACA AGGGGAAGTG GAAAGCAGCC AGGGGAACAT GTTTTGCGAG CCAGAGCTGT
              421 TTTGGCTTGT CACCAGCTGG CCATGGTTCT TCGCCAGCTG TCACGTAAGG CTTCTGTGAA
              481 AGTTAGTAAA ACCTGGAGTG GAACTAAAAA AAGAGCTCAA AGGATTTTAA TTTTTTTGTT
              541 AGAATTTTTG CTGGACTTTT GCACAGGTGA AGACAGTGTA GACGGGAAAA AAAGACAGAA
              601 ACACAGTGGT TTGACTGAGC AGAGATACAG TGCTTTGCCT GAACCAAAAG CTACATAGGT
              661 AAGTAATGTT TTTTTTTGTG TTTTCAGGTT CATGGGTGCC GCACTTGCAC TTTTGGGGGA
              721 CCTAGTTGCT ACTGTTTCTG AGGCTGCTGC TGCCACAGGA TTTTCAGTAG CTGAAATTGC
              781 TGCTGGAGAG GCTGCTGCTA CTATAGAAGT TGAAATTGCA TCCCTTGCTA CTGTAGAGGG
              841 GATTACAAGT ACCTCTGAGG CTATAGCTGC TATAGGCCTT ACTCCTGAAA CATATGCTGT
              901 AATTACTGGA GCTCCGGGGG CTGTAGCTGG GTTTGCTGCA TTGGTTCAAA CTGTAACTGG
              961 TGGTAGTGCT ATTGCTCAGT TGGGATATAG ATTTTTTTGC TGACTGGGAT CATAAAGTTT
             1021 CAAACAGTTT GGGCTTTTTT CAGCAGCCAG CTATGGCTTT ACAGTTATTT AATCAGAGAC
             1081 TACTAATGGA AATTTTTAAT TTGCTGGAGT GATTGCTTTG TTACCATATT CAACTTAATT
            1141 TTAGAATTCG CCTTAGAAAC C
            //

            Please visit Sequencing and PCR primers for primer information.


            References

            Original, user report and related articles

            original Kato, K., Phylogenetic comparison between archetypal and disease-associated JC virus isolates in Japan. Jpn. J. Med. Sci. Biol., 47, 167-178 (1994). PMID 7823412. [link to RRC of NBRP]

            2023.08.18

            GNP_filter3_RDBDEP_html_230702.pl