Complete genome of JC virus, PML-type
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External Database Hum_Polyoma JCV Reference sequence |
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Terms and conditions for distribution | In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature(s) designated by the DEPOSITOR is requested (Virus Genes., 8, 99-105 (1994)). |
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Ordering | Order form [Credit Card Payment] [Bank Transfer Payment] Material Transfer Agreement (MTA for use for not-for-profit academic purpose) [Word] Please visit Information of Request for Distribution.[link] For for-profit-research purpose, please contact us. |
提供条件 | 利用者は、研究成果の公表にあたって寄託者の指定する文献を引用する (Virus Genes., 8, 99-105 (1994))。 |
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提供依頼 | 提供依頼書 [Word] 提供同意書 (MTA、非営利機関による非営利学術研究用)[Word] 手続きの概要は、「提供申込みについて[link]」をご覧ください。営利目的利用についてはお問い合わせください。 |
Catalog # | Resource name | Shipping form | Fee (non-profit org.) |
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RDB07251 | pNY-1B | DNA solution |
Materials & Methods section:
The pNY-1B was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan (cat. RDB07251). |
Reference section:
Yogo, Y., Guo, J., Iida, T., Satoh, K., Taguchi, F., Takahashi, H., Hall, W.W., Nagashima, K., Occurrence of multiple JC virus variants with distinctive regulatory sequences in the brain of a single patient with progressive multifocal leukoencephalopathy. Virus Genes., 8, 99-105 (1994). PMID 7915447. [link to RRC of NBRP] |
Further references such as user reports and related articles (go to bottom)
Featured content
RIKEN BRC has sequenced portions of this material for quality test.
Please review the QC test results indicated by icon as well as clone information before placing your order.
Test sheet | RDB07251_A3Kjp1-3.pdf |
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Nucleotide sequence of a portion of this resource (if available).
Primer: reverse-2 (Pr0100) Region: insert (M13 rev side) Sequence file: RDB07251_A3Kja.seq |
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>07251_07251_B0KrF_Reverse2_B01_02_ABI08.ab1 1 NNNNNNNNNN NNNNNNTNGN ATGCCTGCAG GTCGACTCTA GAGGANCCTG TGTTTTCATC 61 ATCACTGGCA AACATTTCTT CATGGCAAAA CAGGTCTTCA TCCCACTTCT CATTAAATGT 121 ATTCCACCAG GATTCCCATT CATCTGTTCC ATAGGTTGGC ACCTAAAAAA AAACAATTAA 181 GTTTATTGTA AAAAACAAAA TGCCCTGCAA AAGAAAAATA GTGGTTTACC TTAAAGCTTT 241 AGATCCCTGT AGGGGGTGTC TCCAAGAACT TTCTCCCAGC AATGAAGAGC TTCTTGGGTT 301 AAGTCACACC CAAACCATTG TCTGAAGCAA TCAAAGCAAT AGCAATCTAT CCACACAAGT 361 GGGCTGCTTC TTAAAAATTT TCTGTTTCTA TGCCTTAATT TTAGCATGCA CATTAAACAG 421 GGGCAATGCA CTGAAGGATT AGTGGCACAG TTAGGCCATT CCTTGCAATA AAGGGTATCA 481 GAATTAGGAG GAAAATCACA ACCAACCTCT GAACTATTCC ATGTACCAAA ATCAGGCTGA 541 TGAGCAACTT TTACACCTTG TTCCATTTTT TTATATAAAA AATTCATTCT CTTCATCTTG 601 TCTTCGTCCC CACCTTTATC AGGGTGGANT TCTTTGCATT TTTTCANATA AGCTTTTCTC 661 ATGACAGGNA TGNTCCCNCN NTGCAGANCT ATCNNNGNNN NNNNNNN // |
Primer: JCV-H_F (Pr0923) Region: insert (D12575.1) Sequence file: RDB07251_A3Kjb.seq |
>07251_07251_B0KrF_JCV-H_F_G02_20_ABI24.ab1 1 NNNNNNNTNN NNNNNNANNN NNNTNNTTCT CTTCNTCTTG TCTTCGTCCC CACCTTTATC 61 AGGGTGGAGT TCTTTGCATT TTTTCAGATA AGCTTTTCTC ATGACAGGAA TGTTCCCCCA 121 TGCAGACCTA TCAAGGCCTA ATAAATCCAT AAGCTCCATG GATTCCTCCC TATTCAGCAC 181 TTTGTCCATT TTAGCTTTTT GCAGCAAAAA ATTACTGCAA AAAAGGGAAA AACAAGGGAA 241 TTTCCCTGGC CTCCTAAAAA GCCTCCACGC CCTTACTACT TCTGAGTAAG CTTGGAGGCG 301 GAGGCGGCCT CGGCCTCCTG TATATATAAA AAAAAGGGAA GGTAGGGAGG AGCTGGCTAA 361 AACTGGATGG CTGCCAGCCA AGCATGAGCT CATACCTAGG GAGCCAACCA GCTGACAATA 421 GTCCTTAATC ACAAGGAGCT GGCTAAAACT GGATGGCTGC CAGCCAAGCA TGAGCTCATA 481 CCTAGGGAGC CAACCAGCTG ACAATAGTCC TTAATCACAA GTAAACAAAG CACAAGGGGA 541 AGTGGAAAGC AGCCAAGGGA ACATGTTTTG CGAGCCAGAG CTGTTTTGGC TTGTCACCAG 601 CTGGCCATGG TTCTTCGCCN GCTGTCACGT AAGGCTTCTG TGAAAGTTAG TAAAACCTGN 661 ANTGNAACTA AAAAAANANC TCNNNGANTT TNNTTTTTTN GNNANANNTT TTGNNNGNNN 721 TTTNNNNNNN NNN // |
Primer: JCV-M_R1 (Pr0922) Region: insert (D11366.1 5') Sequence file: RDB07251_A3Kjc.seq |
>07251_07251_B0KrF_JCV-M_R1_G01_07_ABI08.ab1 1 NNNNNNNNCN NNNNNTNGNG NNNNNNNCTT TNNNATGTAT CTGANATAGA TATTGACTTA 61 CTAAAACCCC TAAGATGCTC ATCTGGGTCA CCCATTTCTG GAGTTAAAAA GCATTCTACC 121 TCTGTAATTG AGTCAACCCC AGTTTTAACT TCTAGAACTT CTACTCCTCC TCTTATAAGA 181 AGTTTTGGAA CTTGCACGGG GTCCTTCCTT TCTCCTTTTC TTTTTGTTGG GGCCATCTTC 241 ATATGCTTCA AGAGCAGGTG TTACAGTCCC GTACAACCCT AAAAGTAAAG GCAACATCCA 301 TTGAGGAGCA GATCTTTGAT TTGCACCTCC TGGTGCAATA CTTCTTTCTA TAAATTCACC 361 AGATTGCACA TTTGGGGTTT TTAGATCTAG CCTTTGGGTA ACTTCTTGAA TGCTGTCTGC 421 ATCATCTATA CTTTGGGTGT ATGAGTGGCC AAAAGAAATA TAGGTTCCCT CCCTTTGGGC 481 AACTTGCCTT ACCATAGAGG GCCTAACTGG AGACAATCTA GAATAATAGT CTGAAATATA 541 ATTATATAAG TTAGCTGGTG AATTAACTAT TGCCCAAGTA GTTTCTTCCA AAAACCTTGC 601 TAAATTTTCA ACAAATAGCT TTTGGGTTCT TCTCTGAATT TCCTGAGANG NTNANNNTGG 661 CAAATCATCT CTAANNAGAT TCCNAAAANN CNNNNNANTG NGNANAANNA NGGNNNGNNC 721 CNNNNGNNNN NNNNNN // |
Primer: M13_-40 (Pr0410) Region: insert (M13 fwd side) Sequence file: RDB07251_A3Kjd.seq |
>07251_07251_B0KrF_M13_-40_A02_01_ABI08.ab1 1 NNNNNNNNNN NNCNCNGNNN CCGGGGNNCC CNACACTCTA CCCCACCTAA GAAGAAAAAA 61 AAGGTAGAAG ACCCTAAAGA CTTTCCTGTA GATCTGCATG CATTCCTCAG TCAAGCTGTG 121 TTTAGTAATA GAACTGTTGC TTCTTTTGCT GTGTATACCA CTAAAGAAAA AGCTCAAATT 181 TTATATAAGA AACTTATGGA AAAATATTCT GTAACTTTTA TAAGTAGACA TGGTTTTGGG 241 GGTCATAATA TTTTGTTTTT CTTAACACCA CATAGACATA GAGTGTCAGC AATTAATAAC 301 TACTGTCAAA AACTATGTAC CTTTAGTTTT TTAATTTGTA AAGGTGTGAA TAAGGAATAC 361 TTGTTTTATA GTGCCCTGTG TAGACAGCCA TATGCAGTAG TGGAAGAAAG TATTCAGGGG 421 GGCCTTAAGG AGCATGACTT TAACCCAGAA GAACCAGAAG AAACTAAGCA GGTTTCATGG 481 AAATTAGTTA CACAGTATGC CTTGGAAACC AAGTGTGAGG ATGTTTTTTT GCTTATGGGC 541 ATGTACTTAG ACTTTCAGGA AAACCCACAG CAATGCAAAA AATGTGAAAA AAAGGATCAG 601 CCAAATCACT TTAACNATCA TGAAAAACAC TATTATAATG CCCAAATTTT TGCAGANAGC 661 AAAAATCNAA AAAGCANTTG NNNGCNNNCT GTTGANNCTG NANCAGCCAA ACAAANGGTT 721 GANNNNATCC NCANNNNNNN NNN // |
Primer: JCV-M_F3 (Pr0936) Region: insert (D11366.1 5') Sequence file: RDB07251_A3Kje.seq |
>07251_07251_B0KrF_JCV-M_F3_E02_14_ABI24.ab1 1 NNNNNNNNNN NNNNNNNNAN TTCTAGAAGT TAAAACTGGG GTTGACTCAA TTACAGAGGT 61 AGAATGCTTT TTAACTCCAG AAATGGGTGA CCCAGATGAG CATCTTAGGG GTTTTAGTAA 121 GTCAATATCT ATATCAGATA CATTTGAAAG TGACTCCCCA AGTAAGGACA TGCTTCCTTG 181 TTACAGTGTG GCCAGAATTC CACTACCCAA TCTAAATGAG GATCTAACCT GTGGAAATAT 241 ACTCATGTGG GAGGCTGTGA CCTTAAAAAC TGAGGTTATA GGGGTGACAA GTTTGATGAA 301 TGTGCACTCT AATGGTCAAG CAGCTCATGA CAATGGTGCA GGGAAGCCAG TGCAGGGCAC 361 CAGCTTTCAT TTTTTTTCTG TTGGGGGGGA GGCTTTAGAA TTACAGGGGG TGGTTTTTAA 421 TTACAGAACA AAGTACCCAG ATGGAACAAT TTTTCCNAAG AANGCCACAG TGCAATCTCA 481 AGTCATGAAC ACAGAGCACA AGGCGTACCT AGATAAGAAC AAAGCATATC CTGNTGAATG 541 NTGGNTNNNN GATNCCNCCN GANATGAANA CNNNNGANAT TTNGGGNNNC TNNNNNNNNN 601 ANNAAANGNN NNNNNNNN // |
Primer: JCV-M_R3 (Pr0932) Region: insert (D11366.1 mid) Sequence file: RDB07251_A3Kjf.seq |
>07251_07251_B0KrF_JCV-M_R3_E02_14_ABI24.ab1 1 NNNNNNNNNN NNNNNNNTNN NNNNNNGNNT CCCCAAGTAA GGACATGCTT CCTTGTTACA 61 GTGTGGCCAG AATTCCACTA CCCAATCTAA ATGAGGATCT AACCTGTGGA AATATACTCA 121 TGTGGGAGGC TGTGACCTTA AAAACTGAGG TTATAGGGGT GACAAGTTTG ATGAATGTGC 181 ACTCTAATGG TCAAGCAGCT CATGACAATG GTGCAGGGAA GCCAGTGCAG GGCACCAGCT 241 TTCATTTTTT TTCTGTTGGG GGGGAGGCTT TAGAATTACA GGGGGTGGTT TTTAATTACA 301 GAACAAAGTA CCCAGATGGA ACAATTTTTC CAAAGAATGC CACAGTGCAA TCTCAAGTCA 361 TGAACACAGA GCACAAGGCG TACCTAGATA AGAACAAAGC ATATCCTGTT GAATGTTGGG 421 TTCCTGATCC CACCAGAAAT GAAAACACAA GATATTTTGG GACACTAACA GGAGGAGAAA 481 ATGTTCCTCC AGTTCTTCAT ATAACAAACA CTGCCACAAC AGTGTTGCTT GATGAATTTG 541 GTGTTGGGCC ACTTTGCAAA GGTGACAACT TATACTTGTC AGCTGTTGAT GTCTGTGGCA 601 TGTTTACTAA CAGGTCTGGT TCCCAGCAGT GNANAGGACT GTCCAGATAT TTTAANGTTC 661 AGCTNANNNA AANGANGGTT AAAAACCCNN ACCNNATTTC TTTNNNNCNN ACTNNNTNNN 721 NTNNNNNNNN NN // |
Primer: JCV-B_R2 (Pr0934) Region: insert (D11366.1 3') Sequence file: RDB07251_A3Kjg.seq |
>07251_07251_B0KrF_JCV-B_R2_G02_20_ABI24.ab1 1 NNNNNNNNNN NNAANNTGTA NNNNNTATTA CAATAAAGGC TTTTGATTAC AGCATTTTTG 61 TCTGCAACTG TCCATATTTG TCAACATATC TCATCATGTC TGGGTCCCCT GGAAGCTCCT 121 CTGTTCCCTC AAAAACTCTA ACCTCCTCTA CTTGAGCATC CATGCCATAC ATAGGCTGCC 181 CATCAACTCT AGGAGTCCTT CTGTTAATTA AATCAGTAAG AAGGAAAGAA ATTGGGTAGG 241 GGTTTTTAAC CCTCCTTTTC CTTAGCTGAA CCTTAAAATA TCTGGACAGT CCTCTCCACT 301 GCTGGGAACC AGACCTGTTA GTAAACATGC CACAGACATC AACAGCTGAC AAGTATAAGT 361 TGTCACCTTT GCAAAGTGGC CCAACACCAA ATTCATCAAG CAACACTGTT GTGGCAGTGT 421 TTGTTATATG AAGAACTGGA GGAACATTTT CTCCTCCTGT TAGTGTCCCA AAATATCTTG 481 TGTTTTCATT TCTGGTGGGA TCAGGAACCC AACATTCAAC AGGATATGCT TTGTTCTTAT 541 CTAGGTACGC CTTGTGCTCT GTGTTCATGA CTTGAGNNTG CACTGTGGCA TTCTTTGGAA 601 AAATTGTTCC ATCTGGGTAC TTTGTTCTGT AATTAAAAAC CACCCCCTGT AATTCTAAAG 661 CCTCCCCCCC CNANAGAAAA AAAANGNANN CNNGNGNCNN NNNNNNNN // |
Please visit Sequencing and PCR primers for primer information.
Original, user report and related articles
original | Yogo, Y., Occurrence of multiple JC virus variants with distinctive regulatory sequences in the brain of a single patient with progressive multifocal leukoencephalopathy. Virus Genes., 8, 99-105 (1994). PMID 7915447. [link to RRC of NBRP] |
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2023.08.18
GNP_filter3_RDBDEP_html_230702.pl