Resource data sheet
Prev.

pNY-1A

Complete genome of JC virus, PML-type

Catalog number RDB07250
Resource name pNY-1A
Clone info. Complete genome of JC virus, PML-type. JCV genomic DNA derived from the brain of an American PML patient.
Vector backbone pUC19 (Plasmid)
Size of vector backbone 2,690 bp
Selectable markers Amp^r
Gene/insert name Hum_Polyoma JCV genomic DNA
Reference of nucleotide sequence D12574 (DDBJ accession number)
Depositor Yogo, Yoshiaki |

Distribution information

Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
Terms and conditions set forth by the DEPOSITOR In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature(s) designated by the DEPOSITOR is requested (Virus Genes., 8, 99-105 (1994)).
Ordering Please visit Information of Request for Distribution. 
Order form 
[Credit Card Payment]  [Bank Transfer or Check Payment]
Material Transfer Agreement (MTA) [Word]
Distribution information (domestic users) [open/close]


Catalog # Resource name Shipping form Fee (non-profit org.)
RDB07250 pNY-1A DNA solution

Ordering Information [in Japanese] [in English]

References and tips

Electronic file

Featured content

References

original Yogo, Y., Occurrence of multiple JC virus variants with distinctive regulatory sequences in the brain of a single patient with progressive multifocal leukoencephalopathy. Virus Genes., 8, 99-105 (1994). PMID 7915447.

User reports and related articles (go to bottom)


Sequence information

RIKEN BRC has sequenced portions of this material for quality test. Primers and the results are shown below.

Data are summerized on test sheet below.

Test sheet RDB07250_A3Kj.pdf

Nucleotide sequence of a portion of this resource (if available).

Primer: RDB07250_A3Kja.seq
>07250_07250_A3Kj_2_M13(-40)_B01_04.ab1
    1 CGGAGCGGCG TTATTTCGGA GCTCGGTACC GGGGATCCCA ACACTCTACC CCACCTAAGA
   61 AGAAAAAAAA GGTAGAAGAC CCTAAAGACT TTCCTGTAGA TCTGCATGCA TTCCTCAGTC
  121 AAGCTGTGTT TAGTAATAGA ACTGTTGCTT CTTTTGCTGT GTATACCACT AAAGAAAAAG
  181 CTCAAATTTT ATATAAGAAA CTTATGGAAA AATATTCTGT AACTTTTATA AGTAGACATG
  241 GTTTTGGGGG TCATAATATT TTGTTTTTCT TAACACCACA TAGACATAGA GTGTCAGCAA
  301 TTAATAACTA CTGTCAAAAA CTATGTACCT TTAGTTTTTT AATTTGTAAA GGTGTGAATA
  361 AGGAATACTT GTTTTATAGT GCCCTGTGTA GACAGCCATA TGCAGTAGTG GAAGAAAGTA
  421 TTCAGGGGGG CCTTAAGGAG CATGACTTTA ACCCAGAAGA ACCAGAAGAA ACTAAGCAGG
  481 TTTCATGGAA ATTAGTTACA CAGTATGCCT TGGAAACCAA GTGTGAGGAT GTTTTTTTGC
  541 TTATGGGCAT GTACTTAGAC TTTCAGGAAA ACCCACAGCA ATGCAAAAAA TGTGAAAAAA
  601 AGGATCAGCC AAATCACTTT AACCATCATG AAAAACACTA TTATAATGCC CAAATTTTTG
  661 CAGATAGCAA AAATCAAAAA AGCATTTGCC AGCAGGCTGT TGATACTGTA GCAGCCAAAC
  721 AAAGGGTTGA CAGCATCCAC ATGACCAGAG AAGAAATGTT AGTTGAAAGG TTTAATTTCT
  781 TGCTTGATAA AATGGACTTG ATTTTTGGGG CACATGGCAA TGCTGTTTTA GAGCAATATA
  841 TGGCTGGGGT GGCCTGGATT CATTGCTTGC TGCCTCAAAT GGACACTGTT ATTTATGACT
  901 TTCTGAAATG CATTGTATTA AACATTCCAA AAAAAAAGGT ACTGGCTATT CAAGGGGCCA
  961 ATAGACAGTG GCAAAACTAC TTTAGCTGCA GCTTTACTTG ATCTCTGTGG GGGGAAGTCA
 1021 TTAAATGTTA ATATGCCATT AGAAAGATTA AACTTTGAGT TAGAGTGGTA TAGATCAGTT
 1081 TATGGTTGGT ATTTTGAGGA TGTAAAAGCA CTGGTGCAAG TTCAGGATTT CATCGTCAGC
1141 ATGACCATAA GCCAAATCGG CT
//
Primer: RDB07250_A3Kjb.seq
>07250_07250_A3Kj_2_Reverse2_B04_04.ab1
    1 GAACCCGGAA TTACGCCAAG CTTGCATGCC TGCAGGTCGA CTCTAGAGGA TCCTGTGTTT
   61 TCATCATCAC TGGCAAACAT TTCTTCATGG CAAAACAGGT CTTCATCCCA CTTCTCATTA
  121 AATGTATTCC ACCAGGATTC CCATTCATCT GTTCCATAGG TTGGCACCTA AAAAAAAACA
  181 ATTAAGTTTA TTGTAAAAAA CAAAATGCCC TGCAAAAGAA AAATAGTGGT TTACCTTAAA
  241 GCTTTAGATC CCTGTAGGGG GTGTCTCCAA GAACTTTCTC CCAGCAATGA AGAGCTTCTT
  301 GGGTTAAGTC ACACCCAAAC CATTGTCTGA AGCAATCAAA GCAATAGCAA TCTATCCACA
  361 CAAGTGGGCT GCTTCTTAAA AATTTTCTGT TTCTATGCCT TAATTTTAGC ATGCACATTA
  421 AACAGGGGCA ATGCACTGAA GGATTAGTGG CACAGTTAGG CCATTCCTTG CAATAAAGGG
  481 TATCAGAATT AGGAGGAAAA TCACAACCAA CCTCTGAACT ATTCCATGTA CCAAAATCAG
  541 GCTGATGAGC AACTTTTACA CCTTGTTCCA TTTTTTTATA TAAAAAATTC ATTCTCTTCA
  601 TCTTGTCTTC GTCCCCACCT TTATCAGGGT GGAGTTCTTT GCATTTTTTC AGATAAGCTT
  661 TTCTCATGAC AGGAATGTTC CCCCATGCAG ACCTATCAAG GCCTAATAAA TCCATAAGCT
  721 CCATGGATTC CTCCCTATTC AGCACTTTGT CCATTTTAGC TTTTTGCAGC AAAAAATTAC
  781 TGCAAAAAAG GGAAAAACAA GGGAATTTCC CTGGCCTCCT AAAAAGCCTC CACGCCCTTA
  841 CTACTTCTGA GTAAGCTTGG AGGCGGAGGC GGCCTCGGCC TCCTGTATAT ATAAAAAAAA
  901 AGGGAAGGTA GGGAGGAGCT GGCTAAAACT GGATGGGCTG CCCAGCCAAG CATGAGCTCA
  961 TACCTAGGGG AGCCCAACCA GCTGACAGCC AGAGGGAGCC CTGGGCTGCA TGCCACTGGC
 1021 AGTTTATAGT GAAACCCCTT CCCATAGTCC CTTAATCACA AGTAACAAGC ACAGGGAAAG
 1081 TGTCATGTGG CATGCCTGGT CCACCTTGGT TGGGACCATG TTTTTGCGAG CCCAGAAAGC
1141 CTGATATG
//

Please visit Sequencing and PCR primers for primer information.


References

References

original Yogo, Y., Occurrence of multiple JC virus variants with distinctive regulatory sequences in the brain of a single patient with progressive multifocal leukoencephalopathy. Virus Genes., 8, 99-105 (1994). PMID 7915447.

2018.12.10

GNP_filter3_RDBDEP_html_181012.pl