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Thermus thermophilus expression plasmid set

Thermus thermophilus expression plasmid set

Catalog number RDB06119
Resource name Thermus thermophilus expression plasmid set
Clone info. Thermus thermophilus expression plasmid.
Vector backbone pET-11a, pET-11b, pET-3a (Plasmid)
Selectable markers Amp^r
Gene/insert name Thermus thermophilus genomic DNA
Depositor|Developer Kuramitsu, Seiki |
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External Database
Thermus thermophilus

            Reference sequence

            Distribution information

            Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
            Terms and conditions for distribution In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature(s) designated by the DEPOSITOR is requested. (Nature Struct. Biol., 7, 943-945)
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            提供条件 利用者は、研究成果の公表にあたって寄託者の指定する文献を引用する(Nature Struct. Biol., 7, 943-945)。
            提供依頼 手続きの詳細は、「Thermus thermophilus expression plasmid[link]」をご覧ください。
            提供依頼書 [Word]
            提供同意書 (MTA、非営利機関による非営利学術研究用)[Word]

            References and tips

            Featured content

            Featured content Dnaconda's recommendation EXR0047j (Japanese text)
            Featured content Thermus thermophilus Disruption plasmid (en) (English text)
            Featured content Thermus thermophilus Disruption plasmid (ja) (Japanese text)
            Featured content Thermus thermophilus Expression plasmid (en) (English text)
            Featured content Thermus thermophilus Expression plasmid (ja) (Japanese text)


            Original, user report and related articles

            original Agari, Y., Structure and function of a TetR family transcriptional regulator, SbtR, from thermus thermophilus HB8. Proteins, 81 (7): 1166-1178 (2013). PMID 23408580.
            original Yokoyama, S., Structural genomics projects in Japan. Nature Struct. Biol., 7, 943-945 (2000). PMID 11103994.
            reference Brkic, A., Antibiotic hyper-resistance in a class I aminoacyl-tRNA synthetase with altered active site signature motif. bioRxiv 2023.01.31.526100.
            reference Morita, R., Molecular mechanisms of the whole DNA repair system: a comparison of bacterial and eukaryotic systems. J. Nucleic Acids., 2010: 179594 (2010). PMID 20981145.
            user_report Nakatani, M., Crystal structure of a nucleotide-binding domain of fatty acid kinase FakA from Thermus thermophilus HB8. J. Struct. Biol. 214 (4): 107904 (2022). PMID 36228973.
            user_report Mega, R., The Crystal Structures of Thermus Thermophilus CMP Kinase Complexed With a Phosphoryl Group Acceptor and Donor. PLoS One 15 (5): e0233689 (2020). PMID 32469932.
            user_report Ihling, N., Online measurement of the respiratory activity in shake flasks enables the identification of cultivation phases and patterns indicating recombinant protein production in various E. coli host strains. Biotechnol. Prog. 34 (2): 315-327 (2018). PMID 29314728.
            user_report Hartwick, E.W., Ribosome-induced RNA conformational changes in a viral 3'-UTR sense and regulate translation levels. Nat. Commun. 9 (1): 5074 (2018). PMID 30498211.
            user_report Taniguchi, H., A Key Enzyme of the NAD+ Salvage Pathway in Thermus thermophilus: Characterization of Nicotinamidase and the Impact of Its Gene Deletion at High Temperatures. J. Bacteriol. 199 (17). pii: e00359-17 (2017). PMID 28630126.
            user_report Tajima, K., In vitro synthesis of polyhydroxyalkanoates using thermostable acetyl-CoA synthetase, CoA transferase, and PHA synthase from thermotorelant bacteria. J. Biosci. Bioeng. pii: S1389-1723 (16) 30121-30129 (2016). PMID 27342638.
            user_report Tomoike, F., A putative adenosine kinase family protein possesses adenosine diphosphatase activity. Biosci. Biotechnol. Biochem. 80 (11): 2138-2143 (2016). PMID 27484886.
            user_report Diederichs, S., High-level production of (5S)-hydroxyhexane-2-one by two thermostable oxidoreductases in a whole-cell catalytic approach J. Mol. Catalysis B: Enzymatic 121: 37–44 (2015)
            user_report Miyazaki, T., Crystal structure and substrate-binding mode of GH63 mannosylglycerate hydrolase from Thermus thermophilus HB8. J. Struct. Biol. 190 (1): 21-30 (2015). PMID 25712767.
            user_report Kusuba, H., In vitro dihydrouridine formation by tRNA dihydrouridine synthase from Thermus thermophilus, an extreme-thermophilic eubacterium. J. Biochem. 158 (6): 513-521 (2015). PMID 26112661.
            user_report Diederichs, S., Phenotyping the quality of complex medium components by simple online-monitored shake flask experiments. Microb. Cell Fact. 13 (1): 149 (2014). PMID 25376163.
            user_report Matsumoto, A., Crystallization and preliminary X-ray analysis of peptidyl-tRNA hydrolase from Thermus thermophilus HB8. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 69 (Pt 3): 332-335 PMID 23519816.
            user_report Tomoike, F., Unique substrate specificity of purine nucleoside phosphorylases from Thermus thermophilus. Extremophiles, 17 (3): 505-514 (2013). PMID 23546840.
            user_report Hibino, A., Production of uroporphyrinogen III, which is the common precursor of all tetrapyrrole cofactors, from 5-aminolevulinic acid by Escherichia coli expressing thermostable enzymes. Appl. Microbiol. Biotechnol., 97 (16): 7337-7344 (2013). PMID 23604563.
            user_report Shimada, A., MutS stimulates the endonuclease activity of MutL in an ATP-hydrolysis-dependent manner. FEBS J., 280 (14): 3467-3479 (2013). PMID 23679952.
            user_report Agari, Y., Crystal structure of hypothetical protein TTHB210, controlled by the σE/anti-σE regulatory system in Thermus thermophilus HB8, reveals a novel homodecamer. Proteins 80 (3): 958-962 (2012). PMID 22231934.
            user_report Chiba, Y, Discovery and Analysis of Cofactor-dependent Phosphoglycerate Mutase Homologs as Novel Phosphoserine Phosphatases in Hydrogenobacter thermophilus. J. Biol Chem. 287 (15): 11934-11941 (2012). PMID 22337887.
            user_report Ito, Y., In-cell NMR of intrinsically disordered proteins in prokaryotic cells. Methods Mol. Biol., 895: 19-31 (2012). PMID 22760309.
            user_report Tomoike, F., A single amino acid limits the substrate specificity of Thermus thermophilus uridine-cytidine kinase to cytidine. Biochemistry 50( 21): 4597-4607 (2011). PMID 21539325.
            user_report Kondo N., Thermus thermophilus-derived protein tags that aid in preparation of insoluble viral proteins. Anal. Biochem., 385, 278-285 (2009). PMID 19084492.