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pKM2L-phIL1B (#RDB05526)

Promoter Bank clone, Human interleukin 1 beta (IL1B) promoter

Alternative name p1941-3F
Clone info. PCR amplified human interleukin 1 beta (IL1B) promoter sequence was inserted into a Renilla luciferase reporter vector pKM2L (RDB04026). Genomic sequence from 55967 to 52177 (reverse direction) of AC09753.7 corresponding -3757 to +13 (the transcription start site is designated +1. Fig. 1 of Shirakawa, F. Mol. Cell. Biol 13 (3) 1332-1344, 1993 and Fig.1 of Kominato, Y. Mol. Cell. Biol. 15 (1) 58-68, 1995) is cloned. Alternatively, 112840557 to 112836767(NC_000002.12); relatively -3778 to +13, where +1 corresponds to 1 nt of NM_000576.2 was cloned.
Comment PCR cloning, forward primer, 1941 F2: 5' tctagaccagggaggagaatggaatg 3'; reverse primer, E9PB0069R: 5' gaagaggtttggtatctgccagtttc 3'; Entire sequence of promoter region has not been confirmed.
Vector backbone pKM2L (RDB04026) (Plasmid)
Size of vector backbone 4.2 kb
Selectable markers Kan^r
Gene/insert name Human interleukin 1 beta (IL1B) genomic DNA
Depositor|Developer DNA Bank, |
 
Additional map
Remarks, protocol and/or map (pdf) RDB05526.pdf

Distribution information

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Catalog # Resource name Shipping form Fee (non-profit org.)
RDB05526 pKM2L-phIL1B DNA solution JPY 9,460 (not-for-profit academic purpose)
plus cost of shipping containers, dry ice (if required) and shipping charge

Please review the QC test results indicated by check icon below as well as clone information before placing your order.

How to cite this biological resource

Materials & Methods section:

The pKM2L-phIL1B was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan (cat. RDB05526).

Reference section:

Further references such as user reports and related articles (go to bottom)


QC test results

RIKEN BRC has sequenced portions of this material for quality test.
Please review the QC test results indicated by check icon as well as clone information before placing your order.

Test sheet RDB12399_A5Iop1.pdf check

Nucleotide sequence of a portion of this resource (if available).

Primer: M13_-40
Sequence file: RDB12399_A5Ioa.seq check
>05526_12399_A5Io_2_M13(-40)_G12_21.ab1
    1 AGGCGGCGCA GCTTGCATGC CTGCAGGTCA TTTAATAGGG ATAACAGGGT AATGATTAAG
   61 ATCTCGAGCT CTAAGCTTCA CATATGCATG CACTAGTGGC TCTAGACCAG GGAGGAGAAT
  121 GGAATGTTCC TTGGACTCTG CATGTCCCCA ATCTGAGAAC CTGGATCCAA GAGGGAGAAG
  181 AAGCCCATTG GAGATGATGC CATAAAGGAA GTGGAAGCGA TATGATAAAA ATCATAGTGC
  241 CCATTCCCAA ATAATCCCAG AAGCAGAAGG GAAAGGAGAG AAATATCCAC AAAGACAGGT
  301 GTGGGTACAC ACAACATTTT TCATACTTTA AGATCCCAGA GGGACTCATG GAAATGATAC
  361 AAGAAAATGA CTCATAAGAA CAAATATTAG GAAGCCAGTG CCAAGAATGA GATGGGAAAT
  421 TGGGGAAAAT GTTGGGGGCA GATTGCTTAG TTCTGTTCTA AGCAAGAGGG TGAACAAGGA
  481 AGGAACAGCT CACTACAAAG AACAGACATC ACTGCATGTA CACACAATAA TATAAGAACT
  541 AACCCATGAT TATTTTGCTT GTCTTCTTGT TCAAAATGAT TGAAGACCAA TGAGATGAGA
  601 TCAACCTTGA TAACTGGCTG CGAAGCCCAT GATTAGACAC AAGATGGTAT CAGGGCACTT
  661 GCTGCTTTGA ATAAATGTCA GTCTCCTGTC TTGGAAGAAT GACCTGACAG GGTAAAGAGG
  721 AACTTGCAGC TGAGAAAGGC TTTAGTGACT CAAGAGCTGA ATAATTCCCC AAAAGCTGGA
  781 GCATCCTGCA TTTCCAGCTC CCCATCTCTG CTTGTTCCAC TTCCTTTGGG GCTACATCAC
  841 ATCTACATCA TCATCACTCT TCCACTCCCT CCCTAGTGCC AACTATGTTT ATAGCGAGAT
  901 ATTTCTGCTC ATTGGGGAAT CGAGAGGAAG TGCTGTGACT TGAGCGTCTC GTGGAGACAG
  961 ATCTGATACA TACGTGCACA CCTATTGACA TAGAAGTTTC ACTCTGAATG AATGATGATA
1021 ACAATTGGTC AGTTACAGAC AGATGGACAT GCCAAATTCG TTGCGATC
//
Primer: phRLR2
Sequence file: RDB12399_A5Iob.seq check
>05526_12399_A5Io_2_phRLR2_H12_24.ab1
    1 AACTTTATTT GTCTCGAAAG CCAGTTTCTA TTGGTCTCCT TAAACCTGTC TTGTAACCTT
   61 GATACTTACC TGCCCAGTGC CTCACGACCA ACTTCTGCAG TACCCGGGTG AATTCTACGC
  121 GTCGACAGGC GAAGAGGTTT GGTATCTGCC AGTTTCTCCC TCGCTGTTTT TATAGCTTTC
  181 AAAAGCAGAA GTAGGAGGCT GAGAAATTTC TCTGTTGAAT ACCTGATTTC ACAATCAAGT
  241 TAAAGGAAAG GGGAAAAGAG TATTGGTGGA AGCTTCTTAG GGGAGGGGAC TAATAAACTG
  301 AGATAATTCT CTGGTTCATG GAAGGGCAAG GAGTAGCAAA CTATGACACA TTTTGCAAAT
  361 GTATCACCAT GCAAATATGC ATTGTTTTCC TGACAATCGT TGTGCAGTTG ATGTCCACAT
  421 TAAAATACTG GATTTTCCCA CGTTAGAAGA ATGTTTAAAT TTAGTATATG TGGGACAAAG
  481 TGGAAGACAC ACAGATTTAT ACATGCACAT ACTTTTCTTC ATTCACTTCT TTGTACTTAA
  541 GTTTAGGAAT CTTCCCACTT ACAGATGGAT AAATGGGTAC AATGAAGGGC CAATAGCCCT
  601 CCCTGTCTGT ATTGAGGGTG TGGGTCTCTA CCTTGGGTGC TGTTCTCTGC CTCGGGAGCT
  661 CTCTGTCAAT TGCAGGAGCC TCTGAGGAGA AAATTGACCT TTCTTGGCTG GGGCAGAGAA
  721 CATACGGTAT GCAGGGTTCA GGCTCCTGAC GGAGTTGGGG CAACCCTGGA GATAAGCTCA
  781 CACAACCCTG CAAGACCAGG TGCTGTTACC CTAGCCAATC TCATGGATGA ACCAGATCAA
  841 TGCCAGATGA GCTCTGCCTA AAATGATTTT TTTGGTGAAC TCTGAAAAGT GGAATATTGT
  901 TTCTGTAAGA ATATCCATCT GAGACTCTAT CTCTTGGTAA TACCAAGAGT TATCAGTTTC
  961 TCTTTAACCG AGACACCAGC AAAGTGCCTG CTCCAGGGTA CTGCCCAGGG GAGCCCTCCA
 1021 TTTGTAGAAT GAATGAGAGT CCAGGTTATG ACAGTGCCTG CAGTGTAGGA CACTCCTCCT
 1081 TTGCTCTTTG ACAGTCTGCA ATCAATACAC GTTTTTTTTT TTGAGACCGA TTCTCAACTC
1141 TGATCGCCCT AGGCCCTGGG GAGGTTGCCG TTGC
//
Primer: pAxCALNL_F1
Sequence file: RDB12399_A5Ioc.seq check
>05526_12399_A5Io_2_pAxCALNL_F1_H11_23.ab1
    1 ACAATGAATC TTATCATGTC TGCTCGAAGC GGCCGCTCTA GAATTACTGC TCGTTCTTCA
   61 GCACGCGCTC CACGAAGCTC TTGATGTACT TACCCATTTC ATCTGGAGCG TCCTCCTGGC
  121 TGAAGTGGAG GCCCTTCACC TTCACGAACT CGGTGTTAGG GAACTTCTTA GCTCCCTCGA
  181 CAATAGCGTT GGAAAAGAAC CCAGGGTCGG ACTCGATGAA CATCTTAGGC AGATCGTCGC
  241 TGGCCCGAAG GTAGGCGTTG TAGTTGCGGA CAATCTGGAC GACGTCGGGC TTGCCTCCCT
  301 TAACGAGAGG GATCTCGCGA GGCCAGGAGA GGGTAGGCCG TCTAACCTCG CCCTTCTCCT
  361 TGAATGGCTC CAGGTAGGCA GCGAACTCCT CAGGCTCCAG TTTCCGCATG ATCTTGCTTG
  421 GGAGCATGGT CTCGACGAAG AAGTTATTCT CAAGCACCAT TTTCTCGCCC TCTTCGCTCT
  481 TGATCAGGGC GATATCCTCC TCGATGTCAG GCCACTCGTC CCAGGACTCG ATCACGTCCA
  541 CGACACTCTC AGCATGGACG ATGGCCTTGA TCTTGTCTTG GTGCTCGTAG GAGTAGTGAA
  601 AGGCCAGACA AGCCCCCCAG TCGTGGCCCA CAAAGATGAT TTTCTTTGGA AGGTTCAGCA
  661 GCTCGAACCA AGCGGTGAGG TACTTGTAGT GATCCAGGAG GCGATATGAG CCATTCCCGA
  721 TCTTGCCGGA CTTACCCATT CCGATCAGAT CAGGGATGAT GCATCTAGCC ACGGGCTCGA
  781 TGTGAGGCAC GACGTGCCTC CACAGGTAGC TGGAGGCAGC GTTACCATGC AGAAAAATCA
  841 CGGCGTTCTC GGCGTGCTTC TCGGAATCAT AGTAGTTGAT GAAGGAGTCC AGCACGTTCA
  901 TTTGCTTGCA GCGAGCCCAC CACTGAGGCC CAGTGATCAT GCGTTTGCGT TGCTCGGGGT
  961 CGTACACCTT GGAAGCCATG GTGGCTAGCC TATAGTGAGT CGTATTAAGT ACTCTAGCCC
 1021 TTAAGAGCTG TAATTGAACT GGGGAGTGGA CACCCTGGTG GAGAGAGGCA AAGTGGATGT
 1081 CAGTAGACCC ATAGGGTGCC TTATTCGAAC GCAGGAGTCA CCTCTGTTCT CGACAAGCCC
1141 AGATTCTATT TGGAATCCTC CATA
//

Please visit Sequencing and PCR primers for primer information.


References

Original, user report and related articles

reference Kominato, Y., Monocyte expression of the human prointerleukin 1 beta gene (IL1B) is dependent on promoter sequences which bind the hematopoietic transcription factor Spi-1/PU.1. Mol. Cell. Biol. 15 (1): 58-68 (1995). PMID 7799967.
reference Shirakawa, F., The human prointerleukin 1 beta gene requires DNA sequences both proximal and distal to the transcription start site for tissue-specific induction. Mol. Cell. Biol. 13 (3): 1332-1344 (1993). PMID 8441379.
user_report Matsushita, A., TAZ activation by Hippo pathway dysregulation induces cytokine gene expression and promotes mesothelial cell transformation. Oncogene 38: 1966–1978 (2019). PMID 30401981. [link to RRC of NBRP]